PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_028085786.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 838aa MW: 91875.8 Da PI: 6.347 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 55.4 | 1.1e-17 | 26 | 83 | 4 | 57 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++t eq+e+Le++++++++ps +r++L + + +++ +q+kvWFqNrR +ek+ XP_028085786.1 26 YVRYTGEQVEALERVYAECPKPSSLRRQQLIRDCpilsNIEPKQIKVWFQNRRCREKQ 83 5789****************************************************97 PP | |||||||
2 | START | 158.7 | 4.4e-50 | 163 | 370 | 2 | 204 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEE CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlm 94 +aee+++e+++ka+ ++ Wv+++ +++g++++ +f+ s+ +sg a+ra+g+v +++ +e+l+d++ W +++++ e+ g g+++l XP_028085786.1 163 IAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISHRCSGVAARACGLVSLEPT-KIAEILKDRPSWFRDCRSLEVFTMFPAGngGTIELL 256 7899******************************************************.7777777777***********999999999****** PP EEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS START 95 vaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185 +++ +a+++l+p Rdf+++Ry+ l+ g++v++++S++ p+ s++vRae+lpSg+li+p+++g+s +++v+h +l++++++++lr+l+ XP_028085786.1 257 YTQIYAPTTLAPaRDFWTLRYTTNLENGSLVVCERSLSGSGAGPNavaASQFVRAEMLPSGYLIRPCEGGGSIIHIVDHLNLEAWSVPEVLRPLY 351 **************************************9999999899*********************************************** PP HHHHHHHHHHHHHHTXXXX CS START 186 ksglaegaktwvatlqrqc 204 +s+ + ++k++ a+l++ + XP_028085786.1 352 ESSKVVAQKMTIAALRYIR 370 **************99865 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 838 aa Download sequence |
MAMAVAHQHR ESSSDSINRH LDAGKYVRYT GEQVEALERV YAECPKPSSL RRQQLIRDCP 60 ILSNIEPKQI KVWFQNRRCR EKQRKEASRL QTVNRKLTAM NKLLMEENDR LQKQVSQLVC 120 ENGFMRQQLH TASAATDASC ESVVTTTQHS MRDANNPAGL LSIAEETLAE FLSKATGTAV 180 DWVQMPGMKP GPDSVGIFAI SHRCSGVAAR ACGLVSLEPT KIAEILKDRP SWFRDCRSLE 240 VFTMFPAGNG GTIELLYTQI YAPTTLAPAR DFWTLRYTTN LENGSLVVCE RSLSGSGAGP 300 NAVAASQFVR AEMLPSGYLI RPCEGGGSII HIVDHLNLEA WSVPEVLRPL YESSKVVAQK 360 MTIAALRYIR QIAQEASGEV VYGLGRQPAV LRTFSQRLSR GFNDAVNGFN DGGWSIVNCD 420 GAEDVMVAVN STKNLDATSS HSNSLSLLGG ILCAKASMLL ENVPPAVLVR FLREHRSEWA 480 DFNVDAYSAA ALKASSFAYP GMRPTRFTGS QIIMPLGHTI EQEQTLEVIR LEGHSFAQED 540 AFMSRDIHLL QICSGIDENV VGACAELVFA PIDEMFPDDA PLLPSGFRII PLDSKSDTLT 600 ANRTLDLTSS LEVGPATNQV SGDTSSCYNA RSVLTIAFQF PFENNLQDNI AAMARQYVRS 660 VISSVQRVAM AISPSGLSPT VGPKLSPGSP EALTLAHWIC QSYSFHLGTE LLRSDSVGGE 720 SLLKHLWHHP DAILCCSLKS LPVFIFANQA GLDMLETTLV ALQDITLDKI FDESGRKALY 780 SDFAKIMQQG FACLPAGICM STMGRHVSYD QAIAWKVLAA EENTVHCLAF SFVNWSFV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G60690.1 | 0.0 | HD-ZIP family protein |