PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028085691.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family HD-ZIP
Protein Properties Length: 270aa    MW: 31127.5 Da    PI: 4.3513
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028085691.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.11.4e-184295356
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                    k++++t++q++ Le+ Fe ++++  e+++++A++lgL+ rqV++WFqNrRa+ +
  XP_028085691.1 42 KKRRLTTDQVRCLERNFEVENKLEPERKAQIANELGLQPRQVTIWFQNRRARFR 95
                    56789***********************************************98 PP
2HD-ZIP_I/II125.82e-4041132192
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                     ekkrrl+++qv++LE++Fe e+kLeperK+++a+eLglqprqv +WFqnrRAR++tkqlEkdy++Lk++yd lk++ + L ke+e+Lr+e++
  XP_028085691.1  41 EKKRRLTTDQVRCLERNFEVENKLEPERKAQIANELGLQPRQVTIWFQNRRARFRTKQLEKDYDSLKASYDGLKADYDILLKEKERLRNEVH 132
                     69**************************************************************************************9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    
MSVVCIADSA SCSTSMAPFF AHFEKEENCN EDFDGCLYQP EKKRRLTTDQ VRCLERNFEV  60
ENKLEPERKA QIANELGLQP RQVTIWFQNR RARFRTKQLE KDYDSLKASY DGLKADYDIL  120
LKEKERLRNE VHLLTDKLLL TEKENPITEP TDFNNEMATD THKQITNATC ESISEVPMEA  180
SKQEDASSAK SDVFDSESHS SLLEPADSAH AFRSDQSDFS QNEEDELTRT LLPPVCFPKL  240
EDGDYNEQSP TNCCNWSFPV EDQPCWLWPC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.15e-40HD-ZIP family protein