PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028085689.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family HD-ZIP
Protein Properties Length: 285aa    MW: 32883.4 Da    PI: 4.4324
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028085689.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox581.6e-1857110356
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     k++++t++q++ Le+ Fe ++++  e+++++A++lgL+ rqV++WFqNrRa+ +
  XP_028085689.1  57 KKRRLTTDQVRCLERNFEVENKLEPERKAQIANELGLQPRQVTIWFQNRRARFR 110
                     56789***********************************************98 PP
2HD-ZIP_I/II125.62.2e-4056147192
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                     ekkrrl+++qv++LE++Fe e+kLeperK+++a+eLglqprqv +WFqnrRAR++tkqlEkdy++Lk++yd lk++ + L ke+e+Lr+e++
  XP_028085689.1  56 EKKRRLTTDQVRCLERNFEVENKLEPERKAQIANELGLQPRQVTIWFQNRRARFRTKQLEKDYDSLKASYDGLKADYDILLKEKERLRNEVH 147
                     69**************************************************************************************9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    
MEGGTIFKNC NMTVILQNKS PHSSSELLES LWISNSSPSF HENCNEDFDG CLYQPEKKRR  60
LTTDQVRCLE RNFEVENKLE PERKAQIANE LGLQPRQVTI WFQNRRARFR TKQLEKDYDS  120
LKASYDGLKA DYDILLKEKE RLRNEVHLLT DKLLLTEKEN PITEPTDFNN EMATDTHKQI  180
TNATCESISE VPMEASKQED ASSAKSDVFD SESHSSLLEP ADSAHAFRSD QSDFSQNEED  240
ELTRTLLPPV CFPKLEDGDY NEQSPTNCCN WSFPVEDQPC WLWPC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.12e-39HD-ZIP family protein