PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028085688.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family HD-ZIP
Protein Properties Length: 286aa    MW: 33012.5 Da    PI: 4.4057
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028085688.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox581.6e-1858111356
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     k++++t++q++ Le+ Fe ++++  e+++++A++lgL+ rqV++WFqNrRa+ +
  XP_028085688.1  58 KKRRLTTDQVRCLERNFEVENKLEPERKAQIANELGLQPRQVTIWFQNRRARFR 111
                     56789***********************************************98 PP
2HD-ZIP_I/II125.62.2e-4057148192
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                     ekkrrl+++qv++LE++Fe e+kLeperK+++a+eLglqprqv +WFqnrRAR++tkqlEkdy++Lk++yd lk++ + L ke+e+Lr+e++
  XP_028085688.1  57 EKKRRLTTDQVRCLERNFEVENKLEPERKAQIANELGLQPRQVTIWFQNRRARFRTKQLEKDYDSLKASYDGLKADYDILLKEKERLRNEVH 148
                     69**************************************************************************************9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    
MEGGTIFKNC NMTVILQNKS PHSSSELLES LWISNSSPSF HEENCNEDFD GCLYQPEKKR  60
RLTTDQVRCL ERNFEVENKL EPERKAQIAN ELGLQPRQVT IWFQNRRARF RTKQLEKDYD  120
SLKASYDGLK ADYDILLKEK ERLRNEVHLL TDKLLLTEKE NPITEPTDFN NEMATDTHKQ  180
ITNATCESIS EVPMEASKQE DASSAKSDVF DSESHSSLLE PADSAHAFRS DQSDFSQNEE  240
DELTRTLLPP VCFPKLEDGD YNEQSPTNCC NWSFPVEDQP CWLWPC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.12e-39HD-ZIP family protein