PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_028085468.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
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Family | YABBY | ||||||||
Protein Properties | Length: 220aa MW: 25076.7 Da PI: 7.5713 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 167.7 | 8.2e-52 | 29 | 173 | 23 | 169 |
YABBY 23 avsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklsenedeevprvppvir 117 vsvP +sl++vvtvrCGhCtsllsvn++kas + + + +e +ee +e +++ +v ++s+s +ss +e+e++ v + v++ XP_028085468.1 29 QVSVPCSSLSMVVTVRCGHCTSLLSVNMMKASFVPLHLFANSLNQDNEPKEEIIPQEAETQ-KVLDKRSPSLVISSDD-DEEEEDAVLVNHVVNK 121 59**************************999854322222112222223333333333333.3344445555555544.44444455555669** PP YABBY 118 PPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfg 169 PPekrqr+Psayn fikeei+r+ka+ P+++h+eafsaaaknWahfP+i ++ XP_028085468.1 122 PPEKRQRAPSAYNNFIKEEIRRLKAKYPNMTHKEAFSAAAKNWAHFPPIQYK 173 *************************************************987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence |
MHSMICLLSS LSFIFYLFLF DIIFIFKTQV SVPCSSLSMV VTVRCGHCTS LLSVNMMKAS 60 FVPLHLFANS LNQDNEPKEE IIPQEAETQK VLDKRSPSLV ISSDDDEEEE DAVLVNHVVN 120 KPPEKRQRAP SAYNNFIKEE IRRLKAKYPN MTHKEAFSAA AKNWAHFPPI QYKRDGESCG 180 QGAERKMPRT SDVGEVHVEG NGFRERKASR HSIWTKTPFE |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G23420.1 | 4e-64 | YABBY family protein |