PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_028084705.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
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Family | GATA | ||||||||
Protein Properties | Length: 210aa MW: 24299.4 Da PI: 9.6312 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 55.5 | 7.5e-18 | 145 | 177 | 1 | 33 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkk 33 C++C++ kTp+WR gp+g+ tLCnaCG++y+ XP_028084705.1 145 CRHCQSEKTPQWRMGPEGPNTLCNACGVRYKAG 177 ******************************976 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence |
MTVVGEDSYN SRDLFFDHNF DKKSSSYYEG QLCIPQDSLE DLEIFDNFSD DNISLSEFLL 60 IPEQATPGVE DCPLPFSSTE AKPEQPEERQ VEHNKMEPKA KVGRKRTRSK RRRIVDSWGR 120 KIPNNWSLSE KQSPSGGEKK RRRRCRHCQS EKTPQWRMGP EGPNTLCNAC GVRYKAGKLV 180 PEYRPAKSPS FDALKHSNFH RKILKRRGIL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 106 | 111 | RTRSKR |
2 | 110 | 114 | KRRRI |
3 | 139 | 144 | KKRRRR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60530.1 | 5e-34 | GATA family protein |