PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028083976.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family HD-ZIP
Protein Properties Length: 834aa    MW: 91863.1 Da    PI: 6.6484
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028083976.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox47.33.4e-152583357
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                    k t++t+eq+e Le++++++++p+ ++ +++        +L+ +q+k+WFqNrR +e++
  XP_028083976.1 25 KYTRYTAEQVELLEKVYAECPKPNLSHQQQMICDYpilsNLEPKQIKIWFQNRRCRERQ 83
                    679***************************99998999*******************96 PP
2START119.93.6e-381643692202
                     HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlm 94 
                     +aee ++e+++ka  ++  Wv+ + +++g++ + ++  s++++g a+ra+g+v  +++  +e+l d +  W ++++  e+ ++   g  g+++l+
  XP_028083976.1 164 VAEEIMAEFLSKAIGTAIDWVRIPGMKPGPDPVGTVYISHNCTGVAARACGLVSLEPTSILEILKDWS-SWFQDCRNLEVFAKFPAGngGTIELI 257
                     789*******************************************************7777666666.****************9999****** PP

                     EEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS
           START  95 vaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185
                     +++++al++lvp Rdf+++Ry+ + ++g+ v+++ S++     p+    s++ Ra++l Sg+ ++p ++g+s++++v+h dl++ + ++ lr+l+
  XP_028083976.1 258 YTQFYALTTLVPaRDFWTLRYTSTFEDGSIVVCEKSISDYGTGPNpfvASQLTRAKMLASGYFVRPFEGGGSTIHIVDHLDLEALTAPEELRPLY 352
                     *************************************9988888779************************************************ PP

                     HHHHHHHHHHHHHHTXX CS
           START 186 ksglaegaktwvatlqr 202
                     +s+   ++k++va+l++
  XP_028083976.1 353 ESSKLVAQKMTVAALHY 369
                     ***************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 834 aa     Download sequence    
MASMRASHLG KRSSGSGDPH EDCGKYTRYT AEQVELLEKV YAECPKPNLS HQQQMICDYP  60
ILSNLEPKQI KIWFQNRRCR ERQKKEAINF QLLNRKLTAV NKLLTEENDR LQKQVSHLVC  120
ENEYIHQQLK NKSPATTDTS CGSSVNSPQL SLRAANDPTG ILSVAEEIMA EFLSKAIGTA  180
IDWVRIPGMK PGPDPVGTVY ISHNCTGVAA RACGLVSLEP TSILEILKDW SSWFQDCRNL  240
EVFAKFPAGN GGTIELIYTQ FYALTTLVPA RDFWTLRYTS TFEDGSIVVC EKSISDYGTG  300
PNPFVASQLT RAKMLASGYF VRPFEGGGST IHIVDHLDLE ALTAPEELRP LYESSKLVAQ  360
KMTVAALHYI RRIARERSCE VGHGKEPPLR TFSQRLSRGF NDAVSGFNND GWSLMSYGSA  420
EDLVISINTT KNFGTISYPV DPQPLVGGIL CVKASTLLPN VSSALLVRFL REHRTEWADL  480
SIDAYSAASL KAGSFALPGS YTFDFSSSSM LLGHTVDDEE ILEMIRLEGR GLSKKNSVLF  540
QDIHLLQICN GVEDNAIGAC SELIFAPINS MLRDDAPLLS SGFRVLPLDS TTCHRLDMMS  600
PQRITNLLSN LKVTSHEAGS SSSSNDSKSV LIVAFQFPFE NHLLEEVATM AREYIVKVIS  660
SVQRVAWAIQ SPGLIPHVGL RLTAASPEAV TLANWICHSY SSSFGAELLR SSCQSGDSVL  720
KQFWYHRVAI ICCSVKSLPI CLFANGAALD MLETTLVALQ DTTLHQIFDK PGLEALSSII  780
PKIMHQGFVL LSNVTCVSLM GRHVSYEKAI AWKVCDEGGA VYCLAFAFTN GSFL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein