PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028083902.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family HD-ZIP
Protein Properties Length: 808aa    MW: 89694.4 Da    PI: 5.1373
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028083902.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.71.3e-2092147156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     +++ +++t+ q++e+e+lF+++++p+ ++r++L++ lgL+ rqVk+WFqNrR+++k
  XP_028083902.1  92 KKRYHRHTARQIQEMESLFKECPHPDDKQRQRLSQDLGLKPRQVKFWFQNRRTQMK 147
                     688899***********************************************998 PP
2START160.41.4e-502865112206
                     HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS..............SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EE CS
           START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskv.............dsgealrasgvvdmvlallveellddkeqWdetla....ka 79 
                     la + +++lvk+ +a+ep+W +    + g evl  +e ++              +++ea r+++vv+m++ +lv  +ld + +W e ++    +a
  XP_028083902.1 286 LAMSSMDVLVKMCQAGEPLWIRNN--DSGREVLNFEEHTRMfqwpmnlkqngseFRMEATRDTAVVIMNSITLVDAFLDAN-KWMELFPsiisRA 377
                     677899***************999..888888887777666888889999999****************************.************* PP

                     EEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEE CS
           START  80 etlevissg......galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtw 166
                     +tl+ ++sg      g l+lm+ae+qalsplvp R+  f+Ry++q  ++g+w+ivd  ++s q+   ++s+ R +++pSg++i++++ng+s+vtw
  XP_028083902.1 378 KTLQIVTSGvsghasGSLHLMYAEMQALSPLVPtREAHFLRYCQQnVEEGTWAIVDFPLESLQESF-QPSLPRYKRRPSGCVIQDMPNGYSRVTW 471
                     *********************************************99*****************98.9*************************** PP

                     EE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 167 vehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                     veh++++++ +h+++ ++v+sg+a+ga +w+a lqrqce+
  XP_028083902.1 472 VEHAEVEEKAVHQIFDQFVNSGIAFGAHRWLAVLQRQCER 511
                     **************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 808 aa     Download sequence    
MFEGPERMYG DCQVLSSLGG NGVSSESLFS SPIQNPNFNF MANMPFHTFP PIIPKEEIGL  60
MRGKDEMESG SGSEHMEGVS GNEQETEQQP KKKRYHRHTA RQIQEMESLF KECPHPDDKQ  120
RQRLSQDLGL KPRQVKFWFQ NRRTQMKAQQ DRQDNVILRA ENESLKNENY RLQAALRCII  180
CPNCGGPAML GEIGYDEQQL RLDNARLKEE FERVCCLASR YSDRPIQSMG PVPLLPPSLD  240
LDMSIYPRNF QEPMSEMIPV PLMPENSHFP GGGLIMEEDK SLALELAMSS MDVLVKMCQA  300
GEPLWIRNND SGREVLNFEE HTRMFQWPMN LKQNGSEFRM EATRDTAVVI MNSITLVDAF  360
LDANKWMELF PSIISRAKTL QIVTSGVSGH ASGSLHLMYA EMQALSPLVP TREAHFLRYC  420
QQNVEEGTWA IVDFPLESLQ ESFQPSLPRY KRRPSGCVIQ DMPNGYSRVT WVEHAEVEEK  480
AVHQIFDQFV NSGIAFGAHR WLAVLQRQCE RLASLMARNI SDLGVIPSPE ARKNLMNLAQ  540
RMIRTFCVNI STSSGQSWTA LSDSADDTVR ITTRKTTEPG QPSGLILSAV STTWLPHPHY  600
QVFDLLRDEH RRVQLDVLSN GNSLHEVAHI ANGSHPGNCI SLLRINVASN SSQNVELMLQ  660
ESCTDDSGSL VVYATVNVDD IQLAMSSDDP SCIALLPLGF VIVPVGQSTG NNNDCTNING  720
DDVSDTRNFP NSGCLLTVGL QVLASTIPSA KLNLSSVTAI NNHLCNTVQQ INAALVGGGE  780
SCPDNGSIGG SSTEQPATAA AAPPKQTD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46880.10.0HD-ZIP family protein