PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028082917.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

HD-ZIP

Protein Properties

Length: 355aa MW: 39300.2 Da PI: 5.2678

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028082917.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.2	6.5e-19	57	110	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ +q+++Le+ Fe ++++ e++ +LA++lgL+ rqV vWFqNrRa++k XP_028082917.1 57 KKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 110 566899***********************************************9 PP
2	HD-ZIP_I/II	129.7	1.2e-41	56	148	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ekkrrls +qvk+LE++Fe e+kLeperKv+la+eLglqprqvavWFqnrRAR+ktkqlE+dy +Lk++y++lk++ ++L++++e+L ++++e XP_028082917.1 56 EKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYESLKHSYDSLQDDNEALLKQIRE 148 69**************************************************************************************99986 PP

Sequence ? help Back to Top
Protein Sequence Length: 355 aa Download sequence
MKRLGSSDSL GALMSICPTT EEHSPGNNHV YGREFQSMLE GLDEEGCVEE SGQIAEKKRR 60 LSVDQVKALE KNFEVENKLE PERKVKLAQE LGLQPRQVAV WFQNRRARWK TKQLERDYGV 120 LKANYESLKH SYDSLQDDNE ALLKQIRELK SKLKEEENTE SNVSVKEELI PSDSDANKLL 180 QHTTTKPPPP PSVAGSDHPT TTNDLNYETF NTNGGGVSAA ATAAVFPDLK DGSSDSDSSA 240 ILNEDNNNSP NAAAISSGHG GPLLHSHHHH HHHQFMVSPS SSSSAAAAML KFGNSGVNCY 300 PFSDSKAILL DAQKAYQPQF VKIEEHNFFS GDEACNFFSD DQAPTLPWYC SDQWN

Sequence ? help Back to Top

Protein Sequence Length: 355 aa Download sequence

MKRLGSSDSL GALMSICPTT EEHSPGNNHV YGREFQSMLE GLDEEGCVEE SGQIAEKKRR  60
LSVDQVKALE KNFEVENKLE PERKVKLAQE LGLQPRQVAV WFQNRRARWK TKQLERDYGV  120
LKANYESLKH SYDSLQDDNE ALLKQIRELK SKLKEEENTE SNVSVKEELI PSDSDANKLL  180
QHTTTKPPPP PSVAGSDHPT TTNDLNYETF NTNGGGVSAA ATAAVFPDLK DGSSDSDSSA  240
ILNEDNNNSP NAAAISSGHG GPLLHSHHHH HHHQFMVSPS SSSSAAAAML KFGNSGVNCY  300
PFSDSKAILL DAQKAYQPQF VKIEEHNFFS GDEACNFFSD DQAPTLPWYC SDQWN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	57	86	KKRRLSVDQVKALEKNFEVENKLEPERKVK
2	105	113	RRARWKTKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22430.1	2e-70	HD-ZIP family protein