PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028082482.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family HD-ZIP
Protein Properties Length: 308aa    MW: 34872.4 Da    PI: 7.3976
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028082482.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.32.6e-18138192256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     rk+ +++k+q  +Lee F+ +++++ +++  LAk+lgL  rqV vWFqNrRa+ k
  XP_028082482.1 138 RKKLRLSKDQSMILEESFKVHNTLNPKQKLALAKRLGLRPRQVEVWFQNRRARTK 192
                     788899***********************************************98 PP
2HD-ZIP_I/II127.17.5e-41138227191
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                     +kk+rlsk+q+ +LEesF+ +++L+p++K +la++Lgl+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev+eLr +l
  XP_028082482.1 138 RKKLRLSKDQSMILEESFKVHNTLNPKQKLALAKRLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELR-AL 227
                     69*************************************************************************************9.55 PP
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    
MTVEKEDLGL SLSLSFPENR SSLQLNLMPP SSTFPSAPFN PQKMTSWNDN FPSFDRSSET  60
CRVETRSLLI GIDVNRVPST IDCEEEAGVS SPNSTISSIS GKRSEREEPN GDDLDLDLDL  120
ERASSRGISD EEDGDTSRKK LRLSKDQSMI LEESFKVHNT LNPKQKLALA KRLGLRPRQV  180
EVWFQNRRAR TKLKQTEVDC EFLKRCCENL TEENRRLQKE VQELRALKLS PQFYMQMTPP  240
TTLTMCPSCE RVAVPPSSAP SPPIDHRSRQ MGSTHQRPVP INPWVTTTAT TTNPIPHRPL  300
FDALHPRS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1137143SRKKLRL
2187195RRARTKLKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16780.11e-104HD-ZIP family protein