PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028082471.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

MYB

Protein Properties

Length: 313aa MW: 35607.2 Da PI: 6.7225

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028082471.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	48.9	1.5e-15	12	57	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrwqk 46 +g+WT+eEde lv+ v+++G+++W++I r mg + Rt+k+c++rw + XP_028082471.1 12 KGPWTAEEDEVLVKFVNKYGPRDWSSI-RSMGlLPRTGKSCRLRWVN 57 79**********************9.6777788********87 PP
2	Myb_DNA-binding	40.3	7.5e-13	68	108	3	45
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++++eE+ ++ +++G++ W++Ia++++ gRt++++k++w XP_028082471.1 68 KFSAEEERVVIEMQARFGNK-WAAIASHLQ-GRTDNDVKNFWS 108 79****************.*****.*********5 PP

Sequence ? help Back to Top
Protein Sequence Length: 313 aa Download sequence
MERHKSEEMI KKGPWTAEED EVLVKFVNKY GPRDWSSIRS MGLLPRTGKS CRLRWVNKLR 60 PNLKIGCKFS AEEERVVIEM QARFGNKWAA IASHLQGRTD NDVKNFWSSR KKRLARILQS 120 TSPPRQTKSH KSKDNALAVH EMPTLQAPEF TSPQMKEESY SKFQPCSSSS MEDPKMIHKM 180 PQPNFMNPNM ANIDSSQPSL NTTETDTKPS NEILLQLSFT HLPNSKLDLP ILAESHAEPN 240 FLDVFTSHQQ QAFELGDVSQ LINFGSPFFE VEGIGRDDGR ANNDRLASPD SFFDELPSDM 300 FDYLEPCPSS SPL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60460.1	7e-63	MYB family protein