PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028080812.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

Trihelix

Protein Properties

Length: 556aa MW: 59870.8 Da PI: 7.2817

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028080812.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	56.7	6.6e-18	175	261	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ + +L++a++e+ ++l++g+l++ +Weev++ + ++ ++s +qCk+k +nl+kryk ++++++++ s s++p+f+++e XP_028080812.1 175 EWSDTAIACLLDAYTEKFTQLNKGNLRGRDWEEVAAIVseGCEKQTKSIEQCKNKVDNLKKRYKLERHRMNNG-GVSASHWPWFKKME 261 5***********************************44445667899****************9998.566679*****7 PP

Sequence ? help Back to Top
Protein Sequence Length: 556 aa Download sequence
MASCDDDFSL LGDDNAQPPS NPNLHHHHHH RRGVATSHHY QSAPHRFPSK STPLHAPPLS 60 TQPPLPSITA AAKTASAAAV GGGGGEGDDG ENYSNGAFQE VNPYTENDSN PFDEESDPNK 120 SRANNALTEK RKDREELSDG GTTTPYSYKK SKLTSGSAAA AGGGSGGEYR KDREEWSDTA 180 IACLLDAYTE KFTQLNKGNL RGRDWEEVAA IVSEGCEKQT KSIEQCKNKV DNLKKRYKLE 240 RHRMNNGGVS ASHWPWFKKM ELIVGNSLPS KAVSEDDKAV SGSSNSLRQS KRYGTVTPSP 300 VGQMNNMKSK SSTNPRWRRV VFKISGAALA GNGSHNIDPK ATMLIAREIS TACRLGVEVA 360 VVVGGRNFFC GDTWVTETGL DRSTAYQIGM MATVMNSILL QSALEKMGIH SRVQTAFAMP 420 EVAEPYSRQR AIRHLEKGRV VIFGGIGAGT GNPLFSTDTA AALRASEIHA DAVLKGTNVD 480 GVYLCDSRSN GVVSEHISFR ELASSAAPLM DMMAVTYCEE NGIPVVVFNL HEPGNISRAL 540 CGEQVGTLID QTGTVS

Sequence ? help Back to Top

Protein Sequence Length: 556 aa Download sequence

MASCDDDFSL LGDDNAQPPS NPNLHHHHHH RRGVATSHHY QSAPHRFPSK STPLHAPPLS  60
TQPPLPSITA AAKTASAAAV GGGGGEGDDG ENYSNGAFQE VNPYTENDSN PFDEESDPNK  120
SRANNALTEK RKDREELSDG GTTTPYSYKK SKLTSGSAAA AGGGSGGEYR KDREEWSDTA  180
IACLLDAYTE KFTQLNKGNL RGRDWEEVAA IVSEGCEKQT KSIEQCKNKV DNLKKRYKLE  240
RHRMNNGGVS ASHWPWFKKM ELIVGNSLPS KAVSEDDKAV SGSSNSLRQS KRYGTVTPSP  300
VGQMNNMKSK SSTNPRWRRV VFKISGAALA GNGSHNIDPK ATMLIAREIS TACRLGVEVA  360
VVVGGRNFFC GDTWVTETGL DRSTAYQIGM MATVMNSILL QSALEKMGIH SRVQTAFAMP  420
EVAEPYSRQR AIRHLEKGRV VIFGGIGAGT GNPLFSTDTA AALRASEIHA DAVLKGTNVD  480
GVYLCDSRSN GVVSEHISFR ELASSAAPLM DMMAVTYCEE NGIPVVVFNL HEPGNISRAL  540
CGEQVGTLID QTGTVS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10030.1	0.0	Trihelix family protein