PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028080771.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

Trihelix

Protein Properties

Length: 361aa MW: 41929.4 Da PI: 4.2418

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028080771.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	44.3	4.8e-14	123	207	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 Wt++ + +L+ea + +l+r++l +W+ev++k+ +e ++e + +qC+++++ l+k+ykk+k +++ + +s++++f++++ XP_028080771.1 123 WTEHATSVLLEAWGGRYLQLGRKSLSSEDWQEVAEKVsEESKVEWTDTQCRNRLDTLKKKYKKEKSKMESM-GGYTSKWVFFKKMD 207 ***********************************778899**********************96.78888******8 PP

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence
MDDTEDDARY PPKHYVNHSS TYNASSIRSK HSNRNPSYPI TSNYRDEYED DELAEEEEEE 60 NLELDGQDDD DDDDDDDDED IENGFGDESE RRQKKRRLES LVSNYEFVAR KPSYVVRNSS 120 VDWTEHATSV LLEAWGGRYL QLGRKSLSSE DWQEVAEKVS EESKVEWTDT QCRNRLDTLK 180 KKYKKEKSKM ESMGGYTSKW VFFKKMDMLL NSSSSSSTQQ CGLPCGVDSG EYVFMNPRVY 240 LNRSNGLDEM RDSPDESESL SDDDEDSDEL PPKRKGFRGE GNDGSSFRLL ADSIQKFGEI 300 YEKIEDSKRQ QMMELEKMRM DFQRELEVQK KQILERAQTE IAKIREGDDE ETDVSAENLS 360 V

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence

MDDTEDDARY PPKHYVNHSS TYNASSIRSK HSNRNPSYPI TSNYRDEYED DELAEEEEEE  60
NLELDGQDDD DDDDDDDDED IENGFGDESE RRQKKRRLES LVSNYEFVAR KPSYVVRNSS  120
VDWTEHATSV LLEAWGGRYL QLGRKSLSSE DWQEVAEKVS EESKVEWTDT QCRNRLDTLK  180
KKYKKEKSKM ESMGGYTSKW VFFKKMDMLL NSSSSSSTQQ CGLPCGVDSG EYVFMNPRVY  240
LNRSNGLDEM RDSPDESESL SDDDEDSDEL PPKRKGFRGE GNDGSSFRLL ADSIQKFGEI  300
YEKIEDSKRQ QMMELEKMRM DFQRELEVQK KQILERAQTE IAKIREGDDE ETDVSAENLS  360
V

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	91	98	RRQKKRRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24490.1	1e-64	Trihelix family protein