PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028080543.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

CO-like

Protein Properties

Length: 415aa MW: 46260.2 Da PI: 5.3076

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028080543.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	29.2	1.8e-09	16	59	3	40
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 +r C+ + +k+++++C ++ +lC+ C ++ H+ H++v XP_028080543.1 16 ARACDSCLRKRARWYCAADDAFLCQACDSSVHSAnqlasrHERV 59 578*****************************667888888876 PP
2	CCT	68.9	1.3e-23	355	398	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKr+tR+F+KkirY++RK +Ae+RpR+KGrFvk++ XP_028080543.1 355 REARVTRYREKRRTRLFSKKIRYQVRKLNAEKRPRMKGRFVKRS 398 9*****************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 415 aa Download sequence
MITTKKAANA VGGKTARACD SCLRKRARWY CAADDAFLCQ ACDSSVHSAN QLASRHERVR 60 LEKVTSKKAT INLAKIDNFA PAWHQAFTKK ARTPRHAKPV QKITNSLPLV PEISSEEGSP 120 EENIEQLLYR VPVFDPFDTE LCGVDNKVAN EQAESVVGGE LNGGHNEPCD LDNFHGFLPP 180 DMDLAEFVAD VESLLGTGLD EESFGIEGLG LLDCKEEDTM ENTCLEGRKV KVENEDGDGE 240 DVVGCQLGME MARETIDWNF DYESPVTGEE EKIMVVAEME TMNGECREEV ERKIFLRLNY 300 EAVISTWASQ GCPWTTGSRP ELNPNDCLLD FMGSSSNPCV GIGGGRHGRC GDGEREARVT 360 RYREKRRTRL FSKKIRYQVR KLNAEKRPRM KGRFVKRSSC FAAGGPAFPN YLINK

Sequence ? help Back to Top

Protein Sequence Length: 415 aa Download sequence

MITTKKAANA VGGKTARACD SCLRKRARWY CAADDAFLCQ ACDSSVHSAN QLASRHERVR  60
LEKVTSKKAT INLAKIDNFA PAWHQAFTKK ARTPRHAKPV QKITNSLPLV PEISSEEGSP  120
EENIEQLLYR VPVFDPFDTE LCGVDNKVAN EQAESVVGGE LNGGHNEPCD LDNFHGFLPP  180
DMDLAEFVAD VESLLGTGLD EESFGIEGLG LLDCKEEDTM ENTCLEGRKV KVENEDGDGE  240
DVVGCQLGME MARETIDWNF DYESPVTGEE EKIMVVAEME TMNGECREEV ERKIFLRLNY  300
EAVISTWASQ GCPWTTGSRP ELNPNDCLLD FMGSSSNPCV GIGGGRHGRC GDGEREARVT  360
RYREKRRTRL FSKKIRYQVR KLNAEKRPRM KGRFVKRSSC FAAGGPAFPN YLINK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	366	382	RRTRLFSKKIRYQVRKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25440.1	3e-77	CO-like family protein