PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028079507.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family HD-ZIP
Protein Properties Length: 277aa    MW: 31439.3 Da    PI: 8.5922
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028079507.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.17.2e-19132186256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     rk+ ++tkeq  +Le+ F+++ +++ ++++ LAk+l+L  rqV vWFqNrRa+ k
  XP_028079507.1 132 RKKLRLTKEQSIILEDSFKEHTTLNPKQKQSLAKQLNLRPRQVEVWFQNRRARTK 186
                     788899***********************************************98 PP
2HD-ZIP_I/II120.68.4e-39132219188
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 
                     +kk+rl+keq+ +LE+sF+e+++L+p++K++la++L+l+prqv+vWFqnrRARtk+kq+E+++e Lk++y++l++en+rL+ke +eL+
  XP_028079507.1 132 RKKLRLTKEQSIILEDSFKEHTTLNPKQKQSLAKQLNLRPRQVEVWFQNRRARTKLKQTEVECEELKKCYKTLTDENRRLQKELQELK 219
                     69*************************************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    
MVFEGVCNTG LSLGSTSINN PENDHFHQSH HHHQHKINKL SSLKLDHVFP SLTLGLSSEH  60
KHRAPEEIVV SKIHGEIEST VFYRQGSSRS AVSSYSNSSV KRERDNLSAE EVERVSSKVS  120
DDQDQDEEGS ARKKLRLTKE QSIILEDSFK EHTTLNPKQK QSLAKQLNLR PRQVEVWFQN  180
RRARTKLKQT EVECEELKKC YKTLTDENRR LQKELQELKV VKITAPVYMQ MPAATLTMCP  240
SCERIGDGSG ENSSKSPFSI GAKPHFYNPF THPSAAC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1181189RRARTKLKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.19e-83HD-ZIP family protein