PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_028079461.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 209aa MW: 23953.1 Da PI: 6.3062 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.7 | 4.7e-19 | 55 | 108 | 4 | 57 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ++++++eq + Le F +++++ e++ +LA++lgL+ rqV vWFqNrRa++k+ XP_028079461.1 55 KRKLSDEQANLLELNFGNEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKN 108 45899***********************************************95 PP | |||||||
2 | HD-ZIP_I/II | 117.1 | 1e-37 | 54 | 145 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +kr+ls+eq++lLE +F +e+kLe+erK +la+eLgl+prqvavWFqnrRAR+k+k+lE++y++Lk+++d+ + e+++Le+ev +L+e+l+e XP_028079461.1 54 RKRKLSDEQANLLELNFGNEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSKLKTELDSAVVEKCHLETEVMKLKEQLSE 145 8****************************************************************************************986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence |
MTTSINPQVE DQMVLISQFY PGIYTQLVPQ QGEAKPRRRR KKSKGEGSGG GAARKRKLSD 60 EQANLLELNF GNEHKLESER KDRLASELGL DPRQVAVWFQ NRRARWKNKK LEEEYSKLKT 120 ELDSAVVEKC HLETEVMKLK EQLSEAEKEI QRLLERCDGV SSNSPASSFS MEAMDPPPFL 180 GEFGMEGFGN IFYVPENNYN HGMEWVNLI |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 37 | 56 | RRRRKKSKGEGSGGGAARKR |
2 | 37 | 57 | RRRRKKSKGEGSGGGAARKRK |
3 | 38 | 57 | RRRRKKSKGEGSGGGAARKR |
4 | 38 | 58 | RRRRKKSKGEGSGGGAARKRK |
5 | 39 | 59 | RRRRKKSKGEGSGGGAARKRK |
6 | 40 | 60 | RRRRKKSKGEGSGGGAARKRK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G18550.1 | 1e-66 | HD-ZIP family protein |