PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028078998.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family HD-ZIP
Protein Properties Length: 735aa    MW: 80983.7 Da    PI: 6.6235
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028078998.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.62.5e-192782156
                    TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                    +++ +++t++q++ Le+ F+ +++p++++r +L+++lgL  rq+k+WFqNrR+++k
  XP_028078998.1 27 KKRYHRHTAYQIQKLEAIFKDSPHPDEKQRLQLSRELGLAPRQIKFWFQNRRTQMK 82
                    678899***********************************************998 PP
2START167.21.1e-522334632206
                     HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.....SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlev 84 
                     +a  a++e++++ + ++ +W kss    + +n d++ + f+++++     ++ea+r+sgvv+m+   lve ++d++ +W e ++    ka tlev
  XP_028078998.1 233 VAGNAMEEFIRLLQNNDGLWIKSSsdgkDVLNLDTYERLFPRANNknpnVRIEASRDSGVVIMNGLALVEMFMDSN-KWVELFPtiisKARTLEV 326
                     67899*******************99999999999999999998899999**************************.****************** PP

                     ECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--........-TTSE..E-EESSEEEEEEEECTCEEE CS
           START  85 issg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.......sssvv..RaellpSgiliepksnghsk 163
                     issg      g lqlm+ e q+lsplv+ R f+++R ++q ++g+w+iv vS d+  + +e       +s     R+++lpSg+ i++++ng+sk
  XP_028078998.1 327 ISSGvlggqsGSLQLMYEEVQVLSPLVAtRQFYVLRLCQQIEQGSWAIVNVSYDHLPQIQEtslssssHS--LqdRCHKLPSGCFIQDMPNGYSK 419
                     *****************************************************99654444455543223..255******************** PP

                     EEEEE-EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 164 vtwvehvdlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206
                     vtwvehv+ ++++p h l++ l++sgla+ga +w+a lqr ce+
  XP_028078998.1 420 VTWVEHVEIQDKTPtHRLFKDLIHSGLAFGAERWLASLQRMCER 463
                     ******************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 735 aa     Download sequence    
MEYGIGGGAS GGSGGDHHDD SDPHRRKKRY HRHTAYQIQK LEAIFKDSPH PDEKQRLQLS  60
RELGLAPRQI KFWFQNRRTQ MKAQHERADN GALRAENDRI RCENIAIREA LKNVICPTCG  120
GPPVSEDSYF DEQKLQMENA QLKEELDRVS SIAAKYLGRP VSQLPPVQPI QISSLDLSMA  180
TFGAQAMMGG HHSLDLDLDL LHLPVSSSST TPQNLPFQAI NISEMDKSLM ADVAGNAMEE  240
FIRLLQNNDG LWIKSSSDGK DVLNLDTYER LFPRANNKNP NVRIEASRDS GVVIMNGLAL  300
VEMFMDSNKW VELFPTIISK ARTLEVISSG VLGGQSGSLQ LMYEEVQVLS PLVATRQFYV  360
LRLCQQIEQG SWAIVNVSYD HLPQIQETSL SSSSHSLQDR CHKLPSGCFI QDMPNGYSKV  420
TWVEHVEIQD KTPTHRLFKD LIHSGLAFGA ERWLASLQRM CERFACLMVT GNSTRDLGGV  480
IPSSDGKRSM MKLAQRMINN FCGSINPSNG HQWTTFSGLN EVEVRASLHK STDPGQPSGV  540
VLSAATTIWV PVSPQNVFNF FRDERTRPQW DVLFNGNAVQ EVAHIANGSH PGNCISVLRA  600
FNTSQNNMLI LQESCIDSSG SLVVYCPVDL PAINIAMSGE DPSYIPLLPS GFTIMPDGQC  660
DMAVRSRDGG GASTSDSKQS RSTSSAGSLI TVVFQILVSS LPTAKMNPES VTTVNNLIGT  720
TVHQIKAALN CTTSL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.10.0HD-ZIP family protein