PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028078722.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

MYB

Protein Properties

Length: 413aa MW: 44623.3 Da PI: 7.6933

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028078722.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51	3.2e-16	57	102	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd +l ++v +G ++W++Iar + gR++k+c++rw + XP_028078722.1 57 KGPWSPEEDAILSRLVSNFGARNWSLIARGIA-GRSGKSCRLRWCNQ 102 79****************************.*********985 PP
2	Myb_DNA-binding	58.4	1.6e-18	109	153	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r+++T eEd ++v+a++ +G++ W++Iar ++ gRt++ +k++w++ XP_028078722.1 109 RKPFTDEEDRIIVRAHAIHGNK-WASIARLLP-GRTDNAIKNHWNST 153 789*****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 413 aa Download sequence
MPTDSAIDDV TVVVAAAADG GDIEEKNEDI DMAVVGGGEG SGSSGGQAGK KSRDRVKGPW 60 SPEEDAILSR LVSNFGARNW SLIARGIAGR SGKSCRLRWC NQLDPAVKRK PFTDEEDRII 120 VRAHAIHGNK WASIARLLPG RTDNAIKNHW NSTLRRRCTE RRKFKLESSN MLGDFNMDIS 180 KASSEETLSC GDVNSFNSLE GKDVTSRENI KELCEDKAQP EGQSTNEAKE PPTLFRPVAR 240 VSAFNVYNIL DGPETVSSFP SSIPMQGPLV QASRPDVGIY KLLEGACGDR LIPHQCAHGC 300 CGTESKGKPR SSLLGPEFVD YAETQFFPCH ELAAIATDIS NAAWQKSGLE SVNVRAASLG 360 PLVQMGRVVD SKMKGHLHFK EGKNKLMGLM ADPLSTPTGR QSFPVSAKVG GQT

Sequence ? help Back to Top

Protein Sequence Length: 413 aa Download sequence

MPTDSAIDDV TVVVAAAADG GDIEEKNEDI DMAVVGGGEG SGSSGGQAGK KSRDRVKGPW  60
SPEEDAILSR LVSNFGARNW SLIARGIAGR SGKSCRLRWC NQLDPAVKRK PFTDEEDRII  120
VRAHAIHGNK WASIARLLPG RTDNAIKNHW NSTLRRRCTE RRKFKLESSN MLGDFNMDIS  180
KASSEETLSC GDVNSFNSLE GKDVTSRENI KELCEDKAQP EGQSTNEAKE PPTLFRPVAR  240
VSAFNVYNIL DGPETVSSFP SSIPMQGPLV QASRPDVGIY KLLEGACGDR LIPHQCAHGC  300
CGTESKGKPR SSLLGPEFVD YAETQFFPCH ELAAIATDIS NAAWQKSGLE SVNVRAASLG  360
PLVQMGRVVD SKMKGHLHFK EGKNKLMGLM ADPLSTPTGR QSFPVSAKVG GQT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G09230.1	1e-103	MYB family protein