PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028078542.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

MYB

Protein Properties

Length: 290aa MW: 32316.3 Da PI: 9.6022

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028078542.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	47.6	3.7e-15	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+ Ed +l+ ++k +G g W+ +++ g++R++k+c++rw++yl XP_028078542.1 14 RGAWTALEDRILAAYIKAHGEGKWRNLPKRAGLKRCGKSCRLRWLNYL 61 89********************************************97 PP
2	Myb_DNA-binding	51.5	2.4e-16	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ + +E+el+++++k+lG++ W++Ia +++ gRt++++k++w++ XP_028078542.1 67 RGNISHDEEELIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNTT 111 78999***************.*****.**********87 PP

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence
MGRSPCCSKE GLNRGAWTAL EDRILAAYIK AHGEGKWRNL PKRAGLKRCG KSCRLRWLNY 60 LRPDIKRGNI SHDEEELIIR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNT TLGKKVKVGV 120 GVGAGTADSS PPESPQSPTA VKKNKSNSKA KRPATVTDRN PKSSSSSQPR LETSPPPPAA 180 IRTKALRCTA VVAPATDSSS LFINNPTTIE NQSHSSNSII SKPQPEMQYC TTTQHLKYSH 240 GKQVQEEEME EEEEEEEDDD DEWLCLRKRD LRSSRDEGGT VVSFAAWNGR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16720.1	3e-62	MYB family protein