PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028078108.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

MYB

Protein Properties

Length: 404aa MW: 43740 Da PI: 5.9091

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028078108.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.9	2e-17	47	92	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd l ++v ++G ++W++Iar ++ gR++k+c++rw + XP_028078108.1 47 KGPWSPEEDAVLSRLVSKFGARNWSLIARGIP-GRSGKSCRLRWCNQ 92 79****************************.*********985 PP
2	Myb_DNA-binding	56.4	7e-18	99	143	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r+++T eEd +++ a++ +G++ W++Ia+ ++ gRt++ +k++w++ XP_028078108.1 99 RKPFTDEEDRIILAAHAIHGNK-WASIAKLLP-GRTDNAIKNHWNST 143 789*****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 404 aa Download sequence
MKKEDQTESP VLDAAVDAVA DLVVVLEGDG DGNGNGDGGG SSSSRVKGPW SPEEDAVLSR 60 LVSKFGARNW SLIARGIPGR SGKSCRLRWC NQLDPCVKRK PFTDEEDRII LAAHAIHGNK 120 WASIAKLLPG RTDNAIKNHW NSTLRRKGTE LKRLKPSSVN ILEEGSPDCT KASSEETLSY 180 GENNSLRALE GKDLSLTQNR LNHCEEHRAA EINRPALSCP VPRVGAFSVY NPPSSSRTGS 240 IFSRIDPMQG PLIQAVKPYF GVCKFLEGVG VEPVVPLQCG HGCCEASNGA SSRRSLLGPE 300 FVDYDEPPPF SSHELATIAT DLNNIAWIRS GLDSTGTQVV ENAASQRASQ DVAAQMGVFE 360 QNLNHDNFRF EEGRNRLVGT MTDVMSSQMP MPTFALPAEV EGLS

Sequence ? help Back to Top

Protein Sequence Length: 404 aa Download sequence

MKKEDQTESP VLDAAVDAVA DLVVVLEGDG DGNGNGDGGG SSSSRVKGPW SPEEDAVLSR  60
LVSKFGARNW SLIARGIPGR SGKSCRLRWC NQLDPCVKRK PFTDEEDRII LAAHAIHGNK  120
WASIAKLLPG RTDNAIKNHW NSTLRRKGTE LKRLKPSSVN ILEEGSPDCT KASSEETLSY  180
GENNSLRALE GKDLSLTQNR LNHCEEHRAA EINRPALSCP VPRVGAFSVY NPPSSSRTGS  240
IFSRIDPMQG PLIQAVKPYF GVCKFLEGVG VEPVVPLQCG HGCCEASNGA SSRRSLLGPE  300
FVDYDEPPPF SSHELATIAT DLNNIAWIRS GLDSTGTQVV ENAASQRASQ DVAAQMGVFE  360
QNLNHDNFRF EEGRNRLVGT MTDVMSSQMP MPTFALPAEV EGLS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G55730.1	1e-103	MYB family protein