PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028077818.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

MYB

Protein Properties

Length: 573aa MW: 62767.6 Da PI: 8.2044

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028077818.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.5	2.4e-16	75	121	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd+ l++av+ + g++Wk+Ia+ ++ R++ qc +rwqk+l XP_028077818.1 75 KGGWTPEEDDTLKRAVAVFKGKCWKKIAEFFP-DRSEVQCLHRWQKVL 121 688***************************.**********986 PP
2	Myb_DNA-binding	61.1	2.4e-19	127	173	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++++++v ++G+ W+ Ia+ ++ gR +kqc++rw+++l XP_028077818.1 127 KGPWTQEEDDKIIELVSKYGPTKWSVIAKSLP-GRIGKQCRERWHNHL 173 79****************************.***********97 PP
3	Myb_DNA-binding	48.7	1.8e-15	179	222	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +++W eE++ l +a++ +G++ W+ Ia+ ++ gRt++ +k++w++ XP_028077818.1 179 KDAWMLEEELALMNAHRIHGNK-WAEIAKVLP-GRTDNAIKNHWNS 222 679*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 573 aa Download sequence
MSSTSIPATF LKAEKEMAEV KIEEPCLENK QSAAASSSSV SEGSGSVTLK SPEICSPTAT 60 SPSHRRTTGP IRRAKGGWTP EEDDTLKRAV AVFKGKCWKK IAEFFPDRSE VQCLHRWQKV 120 LNPELVKGPW TQEEDDKIIE LVSKYGPTKW SVIAKSLPGR IGKQCRERWH NHLNPDIKKD 180 AWMLEEELAL MNAHRIHGNK WAEIAKVLPG RTDNAIKNHW NSSLKKKLDF YLATGNLPPV 240 AKNGIQNGVK DTSRTASTGK MLVCSNKGSD STAQTSSGTT DVCKIEDDSK DLESSTPVQD 300 MVASSSAPAN KSVDSEVVKC NSLSSDINLR SSDSNIVQKF ERCRTNGDID QDEAIGTSLQ 360 FEIPTYGSLY YEPPQLESSV PSDSDLLKMS WMRESKSSPI TSPISFFTPP CVKSGGLCRQ 420 SPESILKIAA KTFPNTPSIL RKRRTEAQTP MSSKKIGKAS GEEIQVGSRS SDEQEQTTNH 480 LENLGLRDES LNVSPACLGN GTTGLCNGKA FNASPPYRLR SQRTAISKSV EKQLEFAFDK 540 AHQDGNNKSV DSIEEGNPPL NKDCSHASKM GVT

Sequence ? help Back to Top

Protein Sequence Length: 573 aa Download sequence

MSSTSIPATF LKAEKEMAEV KIEEPCLENK QSAAASSSSV SEGSGSVTLK SPEICSPTAT  60
SPSHRRTTGP IRRAKGGWTP EEDDTLKRAV AVFKGKCWKK IAEFFPDRSE VQCLHRWQKV  120
LNPELVKGPW TQEEDDKIIE LVSKYGPTKW SVIAKSLPGR IGKQCRERWH NHLNPDIKKD  180
AWMLEEELAL MNAHRIHGNK WAEIAKVLPG RTDNAIKNHW NSSLKKKLDF YLATGNLPPV  240
AKNGIQNGVK DTSRTASTGK MLVCSNKGSD STAQTSSGTT DVCKIEDDSK DLESSTPVQD  300
MVASSSAPAN KSVDSEVVKC NSLSSDINLR SSDSNIVQKF ERCRTNGDID QDEAIGTSLQ  360
FEIPTYGSLY YEPPQLESSV PSDSDLLKMS WMRESKSSPI TSPISFFTPP CVKSGGLCRQ  420
SPESILKIAA KTFPNTPSIL RKRRTEAQTP MSSKKIGKAS GEEIQVGSRS SDEQEQTTNH  480
LENLGLRDES LNVSPACLGN GTTGLCNGKA FNASPPYRLR SQRTAISKSV EKQLEFAFDK  540
AHQDGNNKSV DSIEEGNPPL NKDCSHASKM GVT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02320.2	1e-170	MYB family protein