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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | XP_028076499.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
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| Family | Trihelix | ||||||||
| Protein Properties | Length: 382aa MW: 44010.8 Da PI: 6.2127 | ||||||||
| Description | Trihelix family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
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| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | trihelix | 89.6 | 3.4e-28 | 271 | 354 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
rW+k+ev+aLi+ar+ +++++++g k+ Weevs ++ g++rs+k+Ckekwen+nk+yk++ e+ kkr +++ +tcpyf++l+
XP_028076499.1 271 RWPKSEVQALITARTALDHKFQKG-PKGSIWEEVSVGLSNMGYSRSAKKCKEKWENINKYYKRTMENGKKR-PDNGKTCPYFHELD 354
8**********************9.99****************************************9998.88999*******98 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 382 aa Download sequence |
MEVFTGDRQL PNDDVEFPVH LTPFPEASHI LYDDRTAEIP PPPETEHHSQ PPPQKLRPIR 60 CHGRTLPEYS YPTVAERSGG LLSCDAELGF LTQLLNGGST SEVPAMQQKM KSEINAECLN 120 LISAGPLFEA ELSSSSDDDG DSSEAMTEPS NRKRKRRTRK KLELYLENMI RKVIQRQEQM 180 HKQLIEMIEK KEKERIQREE AWKQQEIERA KKDEELRAEE RSRSLALISF IQNLLGHEIE 240 IPKSLETSCP EKDECEIHDQ KDLRFDPCNK RWPKSEVQAL ITARTALDHK FQKGPKGSIW 300 EEVSVGLSNM GYSRSAKKCK EKWENINKYY KRTMENGKKR PDNGKTCPYF HELDTLYKSG 360 LINPGNACLC IKNEIEDKSV EE |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 152 | 157 | RKRKRR |
| 2 | 152 | 160 | RKRKRRTRK |
| 3 | 152 | 193 | RKRKRRTRKKLELYLENMIRKVIQRQEQMHKQLIEMIEKKEK |
| 4 | 153 | 194 | RKRKRRTRKKLELYLENMIRKVIQRQEQMHKQLIEMIEKKEK |
| 5 | 154 | 195 | RKRKRRTRKKLELYLENMIRKVIQRQEQMHKQLIEMIEKKEK |
| 6 | 156 | 197 | RKRKRRTRKKLELYLENMIRKVIQRQEQMHKQLIEMIEKKEK |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G47660.1 | 3e-42 | Trihelix family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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