PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028075617.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

HD-ZIP

Protein Properties

Length: 365aa MW: 40161.5 Da PI: 8.4775

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028075617.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	55.7	8.3e-18	197	251	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq Lee F+++++++ +++ LAk+l+L rqV vWFqNrRa+ k XP_028075617.1 197 RKKLRLSKEQSAYLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 251 788899***********************************************98 PP
2	HD-ZIP_I/II	127.8	4.6e-41	197	287	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kk+rlskeq++ LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +lk XP_028075617.1 197 RKKLRLSKEQSAYLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLHKELQELR-ALK 287 69*************************************************************************************9.555 PP

Sequence ? help Back to Top
Protein Sequence Length: 365 aa Download sequence
MELGLSLGDP SRPFGFLAKD REVKTTNTSR NGGVGFCMGL GINNSNGKQE QEEREKASGK 60 GEEESEETLK RSRRNGDDHQ RLSIDPPLQL DLLPRSPVPR NTTHQGVSWP SDNGSSEGGS 120 SGQRGLTAAA RGFDVNRMPP VTAEEEAEDG AAAESSPNSV AAPFQMDFCI YRGAGNGGGN 180 KRASSRASDD DENGLARKKL RLSKEQSAYL EESFKEHNTL NPKQKLALAK QLNLRPRQVE 240 VWFQNRRART KLKQTEVDCE YLKRCCETLT EENRRLHKEL QELRALKTSN PFYMQLPATT 300 LTMCPSCERV ATTTTTTTPS AAATTNSTDP SSKATTPFPI SRPRFYPFSQ PQPQSQPPHQ 360 SSAAS

Sequence ? help Back to Top

Protein Sequence Length: 365 aa Download sequence

MELGLSLGDP SRPFGFLAKD REVKTTNTSR NGGVGFCMGL GINNSNGKQE QEEREKASGK  60
GEEESEETLK RSRRNGDDHQ RLSIDPPLQL DLLPRSPVPR NTTHQGVSWP SDNGSSEGGS  120
SGQRGLTAAA RGFDVNRMPP VTAEEEAEDG AAAESSPNSV AAPFQMDFCI YRGAGNGGGN  180
KRASSRASDD DENGLARKKL RLSKEQSAYL EESFKEHNTL NPKQKLALAK QLNLRPRQVE  240
VWFQNRRART KLKQTEVDCE YLKRCCETLT EENRRLHKEL QELRALKTSN PFYMQLPATT  300
LTMCPSCERV ATTTTTTTPS AAATTNSTDP SSKATTPFPI SRPRFYPFSQ PQPQSQPPHQ  360
SSAAS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	67	72	ETLKRS
2	246	254	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	8e-68	HD-ZIP family protein