PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028074710.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

MYB

Protein Properties

Length: 351aa MW: 38481 Da PI: 8.4475

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028074710.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.6	2.5e-17	35	82	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEdell +++++ G g+W+t +++ g+ R++k+c++rw +yl XP_028074710.1 35 RGPWTPEEDELLSNYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYL 82 89****************************99**********97 PP
2	Myb_DNA-binding	46.3	9.6e-15	93	133	6	48
HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l XP_028074710.1 93 PDEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 133 79*************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence
MRQPSSSLSA AAAKGRGKGT GTSKTPCCSK VGMKRGPWTP EEDELLSNYI NKEGEGRWRT 60 LPKRAGLLRC GKSCRLRWMN YLRPSVKRGL IAPDEEDLIL RLHRLLGNRW SLIAGRIPGR 120 TDNEIKNYWN THLSKKLISQ GIDPRTHKPL SPNSSSVAAD DKPSSSKANQ IQIQMPPNPN 180 PNLVTPPPPA LDQPVSSSRR ILINKGRNGY SEGANLGQYY HGEEEGEGVG NGGVLNIQNN 240 SDICGIGLGG SNGLGSNEDD DYEIDYGTND VFSSFLNSLI NEDVFNSQQY VQVQQQSNEI 300 SIAPAAAGSS DPLIYPPPQS LAFVAGWDAP IMSAFNQNDP RRFRDHMEKQ I

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence

MRQPSSSLSA AAAKGRGKGT GTSKTPCCSK VGMKRGPWTP EEDELLSNYI NKEGEGRWRT  60
LPKRAGLLRC GKSCRLRWMN YLRPSVKRGL IAPDEEDLIL RLHRLLGNRW SLIAGRIPGR  120
TDNEIKNYWN THLSKKLISQ GIDPRTHKPL SPNSSSVAAD DKPSSSKANQ IQIQMPPNPN  180
PNLVTPPPPA LDQPVSSSRR ILINKGRNGY SEGANLGQYY HGEEEGEGVG NGGVLNIQNN  240
SDICGIGLGG SNGLGSNEDD DYEIDYGTND VFSSFLNSLI NEDVFNSQQY VQVQQQSNEI  300
SIAPAAAGSS DPLIYPPPQS LAFVAGWDAP IMSAFNQNDP RRFRDHMEKQ I

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13540.1	2e-79	MYB family protein