PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028074224.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

HD-ZIP

Protein Properties

Length: 295aa MW: 33881.9 Da PI: 4.9881

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028074224.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.4	2.8e-19	59	111	4	56
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++++ +q+++Le+ Fe ++++ e++ ++A++lgL+ rqV +WFqNrRa++k XP_028074224.1 59 KRRLSLDQVKALEKIFEVDNKVEPEQKVKIAEELGLEPRQVAIWFQNRRARWK 111 457899**********************************************9 PP
2	HD-ZIP_I/II	124.2	5.9e-40	57	148	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 e+krrls +qvk+LE+ Fe ++k+epe+Kv++a+eLgl+prqva+WFqnrRAR+ktkqlE+dy Lk++y+al+ + ++Leke+e L +elk XP_028074224.1 57 ERKRRLSLDQVKALEKIFEVDNKVEPEQKVKIAEELGLEPRQVAIWFQNRRARWKTKQLERDYGLLKSNYEALRVDYHKLEKEKEGLIAELK 148 69*************************************************************************************99987 PP

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence
MKRFSIPETL GAMIYPTQEK KKNRKNNFAY STEFQAMLDG LDDEYEECTE ESSQSSERKR 60 RLSLDQVKAL EKIFEVDNKV EPEQKVKIAE ELGLEPRQVA IWFQNRRARW KTKQLERDYG 120 LLKSNYEALR VDYHKLEKEK EGLIAELKGL RAKLGEENTD SNHSVKEDAL FLEPDNNVLE 180 QSKASLTAIC GKPEQTNLGN NGNLLEIKGY LGIKHGLSDN NHSGVFNEDN NLNAQLLSSM 240 NSSLMNCFQF LDSRAVAEKG YSHQFVKMEE QSLFETEDSA NIFSVDQAPT LQWHF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	57	62	ERKRRL
2	58	87	RKRRLSLDQVKALEKIFEVDNKVEPEQKVK
3	106	114	RRARWKTKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G40060.1	4e-43	HD-ZIP family protein