PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028074198.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

HD-ZIP

Protein Properties

Length: 294aa MW: 33687 Da PI: 6.5313

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028074198.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.7	4.7e-19	60	112	4	56
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++++ +q+++Le+ Fe ++++ e++ ++A++lgL+ rqV +WFqNrRa++k XP_028074198.1 60 KRRLSLNQVKALEKIFEVDNKVEPEQKVKIAEELGLEPRQVAIWFQNRRARWK 112 4578999*********************************************9 PP
2	HD-ZIP_I/II	123.4	1.1e-39	58	149	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 e+krrls +qvk+LE+ Fe ++k+epe+Kv++a+eLgl+prqva+WFqnrRAR+ktkqlE+dy Lk++y+alk + ++Leke+e L +elk XP_028074198.1 58 ERKRRLSLNQVKALEKIFEVDNKVEPEQKVKIAEELGLEPRQVAIWFQNRRARWKTKQLERDYGLLKSNYEALKVDYHKLEKEKEGLIAELK 149 69*************************************************************************************99987 PP

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence
MKPFSIPETL GAMSYPPQEK KKKNRKNNFA YSTEFQAMLD GLDDEYEERT DESSQSSERK 60 RRLSLNQVKA LEKIFEVDNK VEPEQKVKIA EELGLEPRQV AIWFQNRRAR WKTKQLERDY 120 GLLKSNYEAL KVDYHKLEKE KEGLIAELKG LRAKLGEENT NSNHSVKEDA LFLEPDNNVL 180 EQSKASLIAI CGKPELTNLG NNGNLLEIKG YLGIKHGLSE NNHSGVFNED NNLNAQLLSS 240 MNSSLMNCFQ FLDSRAVAEK GYSHQFVKME EQQRTLPIFS QLIKHQPCNG TFEA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	58	63	ERKRRL
2	59	88	RKRRLSLNQVKALEKIFEVDNKVEPEQKVK
3	107	115	RRARWKTKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65310.2	8e-45	HD-ZIP family protein