PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028074193.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family HD-ZIP
Protein Properties Length: 271aa    MW: 30671.6 Da    PI: 5.8836
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028074193.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.52e-1742871156
                    HHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox 11 qleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                    ++++Le+ Fe ++++  e++ ++A++lgL+ rqV +WFqNrR+++k
  XP_028074193.1 42 EVKALEKIFEVDNKVEPEQKVKIAQELGLEPRQVAIWFQNRRTRWK 87
                    5789*****************************************9 PP
2HD-ZIP_I/II110.11.5e-35421241092
     HD-ZIP_I/II  10 qvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                      vk+LE+ Fe ++k+epe+Kv++a+eLgl+prqva+WFqnrR R+ktkqlE+dy  Lk++y+alk + ++Leke+e L +elk
  XP_028074193.1  42 EVKALEKIFEVDNKVEPEQKVKIAQELGLEPRQVAIWFQNRRTRWKTKQLERDYGLLKSNYEALKVDYHKLEKEKEGLIAELK 124
                     689***************************************************************************99987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    
MSSVHHNSPK EAMVKNDFIA QSTMEYKNGP RPRLGPGLSL FEVKALEKIF EVDNKVEPEQ  60
KVKIAQELGL EPRQVAIWFQ NRRTRWKTKQ LERDYGLLKS NYEALKVDYH KLEKEKEGLI  120
AELKGLRAKL GEENTDSNHS VKEDALFLEP DNSVLEQSKA SLTAICGQPE LTNLGNNGNL  180
LEIKGYLGIK HGLSDNNHSG VFNEDSNLNA QLLSSMNSSL MNCFQFLDSR AVAEKGYSHQ  240
FVKMEEQSLF GTEDSVNIFS VDQAPTLQWH F
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18290RRTRWKTKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65310.24e-39HD-ZIP family protein