PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028074031.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

C2H2

Protein Properties

Length: 393aa MW: 44114.8 Da PI: 6.2941

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028074031.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	10.8	0.0016	4	26	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C ksF + L H+r+H XP_028074031.1 4 HRCKLCFKSFINGRALGGHMRSH 26 79********************9 PP
2	zf-C2H2	12.4	0.00047	254	276	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ C+k+F++ L H +H XP_028074031.1 254 YKCETCHKVFRSYQALGGHRASH 276 9***********99999998887 PP
3	zf-C2H2	11.6	0.00084	311	333	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp C ++Fs+ L H r+H XP_028074031.1 311 HECPVCYRVFSSGQALGGHKRSH 333 79******************999 PP

Sequence ? help Back to Top
Protein Sequence Length: 393 aa Download sequence
MDKHRCKLCF KSFINGRALG GHMRSHMLNL YVPPKPEQQS QQQPNEMGQL GEETESASSS 60 SSSSSSSSEE ENDEKALLSY GLRENPKKSI RLVDPEFSFA VDAAGSGGSV ILQDRESETE 120 SSKNPIRRRS KRIRRSGIPH HHHNHHCQDQ KTQKESPMKR PKSGKLGSPE QQQQLPPPPC 180 TAEPEAVSSI SDTTPEEDVA YCLIMMSRDK WMRDEEQEPE PEYEDDDDDE TEESDEIEVE 240 RKQSKVNKIS RAKYKCETCH KVFRSYQALG GHRASHKKAR AHNNGVLNQT HEASLQVVEN 300 RNVGVSEEKI HECPVCYRVF SSGQALGGHK RSHVTGSSTT ITTTTINHPP KQPLKSVETL 360 IDLNLPAPID DDELSQIELS AVSDAEFVNQ FKH

Sequence ? help Back to Top

Protein Sequence Length: 393 aa Download sequence

MDKHRCKLCF KSFINGRALG GHMRSHMLNL YVPPKPEQQS QQQPNEMGQL GEETESASSS  60
SSSSSSSSEE ENDEKALLSY GLRENPKKSI RLVDPEFSFA VDAAGSGGSV ILQDRESETE  120
SSKNPIRRRS KRIRRSGIPH HHHNHHCQDQ KTQKESPMKR PKSGKLGSPE QQQQLPPPPC  180
TAEPEAVSSI SDTTPEEDVA YCLIMMSRDK WMRDEEQEPE PEYEDDDDDE TEESDEIEVE  240
RKQSKVNKIS RAKYKCETCH KVFRSYQALG GHRASHKKAR AHNNGVLNQT HEASLQVVEN  300
RNVGVSEEKI HECPVCYRVF SSGQALGGHK RSHVTGSSTT ITTTTINHPP KQPLKSVETL  360
IDLNLPAPID DDELSQIELS AVSDAEFVNQ FKH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60580.1	2e-43	C2H2 family protein