PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028073987.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

C2H2

Protein Properties

Length: 567aa MW: 61766 Da PI: 8.9849

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028073987.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17	1.6e-05	91	113	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_028073987.1 91 FVCEICNKGFQRDQNLQLHRRGH 113 89*******************88 PP
2	zf-C2H2	15.4	5.2e-05	167	189	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H++t+ XP_028073987.1 167 WKCDKCSKKYAVQSDWKAHQKTC 189 58*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 567 aa Download sequence
MSNNTGDDGS FSSGNTGEEV QRLQENKIQN HFQGSSSGPS TAAAANINGS STQPQPQEPP 60 VKKKRNLPGT PDPTAEVVAL SPTTLMATNR FVCEICNKGF QRDQNLQLHR RGHNLPWKLR 120 QRTSTEVRKR VYICPEPTCV HHNPARALGD LTGIKKHFSR KHGEKKWKCD KCSKKYAVQS 180 DWKAHQKTCG TREYKCDCGT IFSRRDSFIT HRAFCDALAE ENNKVNQGGI IPSMGSNIPG 240 QMPDLMASMP IDSNTNTSVG ISEFNNYDPK NPLKSLPQEL MPFKTMNMAG GMFSTSSGSL 300 FGSPRNISSS SSSLQLSPNS PSGINYFQDS KTGSQLSGSA HMSATALLQK AAQMGATASN 360 SINSPMMQKG FVSSMAGPDQ LSGMRAIQQH DNSFERFQTQ SDQSTLVGIN GGGFTNPLLQ 420 KSPQEISQLF ESGTGSSAMS DMGGFGGMFN MGGGDQSQGF VKNMETEASN SSNLMQGRSP 480 MPTGRSLTGM SRFGGNGSGN NDMMTVDFLG IGGSRPPNFH EQQQRQQQQQ QRLEMEAMSQ 540 QRMQVMNPFQ QHLSQGEPTM EKSIWDV

Sequence ? help Back to Top

Protein Sequence Length: 567 aa Download sequence

MSNNTGDDGS FSSGNTGEEV QRLQENKIQN HFQGSSSGPS TAAAANINGS STQPQPQEPP  60
VKKKRNLPGT PDPTAEVVAL SPTTLMATNR FVCEICNKGF QRDQNLQLHR RGHNLPWKLR  120
QRTSTEVRKR VYICPEPTCV HHNPARALGD LTGIKKHFSR KHGEKKWKCD KCSKKYAVQS  180
DWKAHQKTCG TREYKCDCGT IFSRRDSFIT HRAFCDALAE ENNKVNQGGI IPSMGSNIPG  240
QMPDLMASMP IDSNTNTSVG ISEFNNYDPK NPLKSLPQEL MPFKTMNMAG GMFSTSSGSL  300
FGSPRNISSS SSSLQLSPNS PSGINYFQDS KTGSQLSGSA HMSATALLQK AAQMGATASN  360
SINSPMMQKG FVSSMAGPDQ LSGMRAIQQH DNSFERFQTQ SDQSTLVGIN GGGFTNPLLQ  420
KSPQEISQLF ESGTGSSAMS DMGGFGGMFN MGGGDQSQGF VKNMETEASN SSNLMQGRSP  480
MPTGRSLTGM SRFGGNGSGN NDMMTVDFLG IGGSRPPNFH EQQQRQQQQQ QRLEMEAMSQ  540
QRMQVMNPFQ QHLSQGEPTM EKSIWDV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-100	C2H2 family protein