PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028073891.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

CO-like

Protein Properties

Length: 398aa MW: 44738 Da PI: 5.6924

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028073891.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	25	3.9e-08	28	72	2	40
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 ++r+C+ ++e ++ l+C+ ++ lC +C ++ H+ Ht++ XP_028073891.1 28 QKRICDFCGESKALLYCRADSAKLCFSCDQQVHSTnqlftkHTRS 72 789*****99*******************668888888875 PP
2	zf-B_box	25.1	3.6e-08	73	116	4	42
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg.....Htvvpl 42 C+ +++ ++++ C + + lC++C e+H+ H+++pl XP_028073891.1 73 LLCDSCDSTPASILCSSENLVLCQNCDWEIHSKslssiHQRRPL 116 57*****************************6689999998875 PP
3	CCT	53.9	6.2e-19	354	396	1	43
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 R+ a++RYkeK+ktR+++K++rYesR+ +Ae+R R+KGrF+k XP_028073891.1 354 RDFAISRYKEKKKTRRYDKHVRYESRRIRAEKRTRIKGRFAKI 396 6779*************************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 398 aa Download sequence
MADASATPLH VKQDNEEEEQ DQEKSKTQKR ICDFCGESKA LLYCRADSAK LCFSCDQQVH 60 STNQLFTKHT RSLLCDSCDS TPASILCSSE NLVLCQNCDW EIHSKSLSSI HQRRPLEGFH 120 GCPSVNELLS VLGFEDSSKK DLFCDDDLVD GCGGFGKEGL GDDGFSDLLV WETPCIVSID 180 DLIVSNSSQH CFQAMGVPPL PKNRKAACGK YNEEILRQLR KMAKSESNFD DYGHGDDIEP 240 LMQFQSPVPE QDLQPGNMYA GFEHGTDLST VPHYEASALW CSDNVELANQ GLRPSKLQAS 300 YIEESCLVPE KDSDIGGSAS HANCGHEVES QHHVTEALHV LPKVTIRELT SQERDFAISR 360 YKEKKKTRRY DKHVRYESRR IRAEKRTRIK GRFAKIEH

Sequence ? help Back to Top

Protein Sequence Length: 398 aa Download sequence

MADASATPLH VKQDNEEEEQ DQEKSKTQKR ICDFCGESKA LLYCRADSAK LCFSCDQQVH  60
STNQLFTKHT RSLLCDSCDS TPASILCSSE NLVLCQNCDW EIHSKSLSSI HQRRPLEGFH  120
GCPSVNELLS VLGFEDSSKK DLFCDDDLVD GCGGFGKEGL GDDGFSDLLV WETPCIVSID  180
DLIVSNSSQH CFQAMGVPPL PKNRKAACGK YNEEILRQLR KMAKSESNFD DYGHGDDIEP  240
LMQFQSPVPE QDLQPGNMYA GFEHGTDLST VPHYEASALW CSDNVELANQ GLRPSKLQAS  300
YIEESCLVPE KDSDIGGSAS HANCGHEVES QHHVTEALHV LPKVTIRELT SQERDFAISR  360
YKEKKKTRRY DKHVRYESRR IRAEKRTRIK GRFAKIEH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47890.1	3e-91	CO-like family protein