PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028073469.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

MYB

Protein Properties

Length: 1009aa MW: 113886 Da PI: 9.8347

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028073469.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.2	8.8e-09	227	270	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +W + Ed++l++ v++ G ++W Ia +g++Rt+ qc r+q XP_028073469.1 227 PWGKMEDKKLLHIVQERGINNWIEIAVLLGTNRTPFQCLARYQR 270 7*****************************************96 PP
2	Myb_DNA-binding	45.3	2e-14	279	322	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 WT++Ed +l av+ lG +W ++a+t+ gRt+ qc +rw k XP_028073469.1 279 REWTEDEDNKLRAAVEALGESNWQSVASTLE-GRTGTQCSNRWIK 322 68***************************.*********87 PP
3	Myb_DNA-binding	51.3	2.8e-16	332	375	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 grWT++Ed++l+ av ++G++tWk++a+ + gRt qc++rw++ XP_028073469.1 332 GRWTKDEDKRLKVAVMLFGPKTWKKVAKFVL-GRTHVQCRERWFN 375 8***************************9.*********98 PP
4	Myb_DNA-binding	50.7	4e-16	384	428	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 grWT++Ed +l+ a+ ++G W+++a++++ Rt++qc+ rw +l XP_028073469.1 384 GRWTEDEDSKLKAAISEHGYC-WSKVASCVP-PRTDNQCRRRWKVLL 428 8****************99.*****.9********9875 PP

Sequence ? help Back to Top
Protein Sequence Length: 1009 aa Download sequence
MISPRDSSFP KSAQMFVDAI KKNRACQKFL RSKMIQIEAR IEENKKLKQR VKILKDFQVT 60 CKKRTGRALS QKKDARVQLI SAKKPRTNSK VNGKKVSALY YGPDENCHVP IYRMVLTKFP 120 ISLSREKWSD EERTNLAKGI KQQLQELLFQ KSVDLISDVE GSIEDSNDFG SIVASIRDLD 180 ITPANIRSYL PKVNWERLAS MYVTGHSGAE CESRWLNCED PLINHHPWGK MEDKKLLHIV 240 QERGINNWIE IAVLLGTNRT PFQCLARYQR SLNASILKRE WTEDEDNKLR AAVEALGESN 300 WQSVASTLEG RTGTQCSNRW IKSLHPARQK VGRWTKDEDK RLKVAVMLFG PKTWKKVAKF 360 VLGRTHVQCR ERWFNSLDPA LNMGRWTEDE DSKLKAAISE HGYCWSKVAS CVPPRTDNQC 420 RRRWKVLLPH EVPLLQAARR IQKAALISNF VDRESERPAL GPNDFIPLAL TNTVSESENV 480 NLAGKQKRKS RRRSGSKANR KVSRSKRPTK ETEISYKEVL LLTDGNEVEN FAGEGVISNK 540 RVMKLRPRKK RSYEPNEDVI GNGLEVRQFD GVTKKRRSLG RRKRTFSGRP EVNEIDDSMK 600 ERTMEPCSKK NKGTGLTKAH LSAYEDSELL VMTNGEDVGE RGGDAIAKNK KEIKPGRRKR 660 KRAEPLDGIS GIINSANIVK NKKPSSPHLQ DECTDPTQDH SSSCPDSTPL MITNGNEVEA 720 FGDNGERKNN TLKLGSRNSK YSRLLQELSE INDSIEVETL DGCDAIVKKK RVTKQSLKKC 780 SDPNHSFSSE SFTETDNEVE AFVGNDATKK RRASKPHSMS KCTDHIETSG VENTTLHRKR 840 RAKLQPNQSE TTELVEVSER ISLSQKCSTY VLLDNDNSRA SGVCTQERLK RSRTSESCSN 900 HTLEAEDGDD DMTLACFIKN NVKRRRLKLA EKGNDISSHL EDQPGTIAGE INCGKSRLVA 960 GGTLAFHESL IEPLSIDVEG VFEDGDDDPS DTSSPPPGFE NPIYGRSPS

Sequence ? help Back to Top

Protein Sequence Length: 1009 aa Download sequence

MISPRDSSFP KSAQMFVDAI KKNRACQKFL RSKMIQIEAR IEENKKLKQR VKILKDFQVT  60
CKKRTGRALS QKKDARVQLI SAKKPRTNSK VNGKKVSALY YGPDENCHVP IYRMVLTKFP  120
ISLSREKWSD EERTNLAKGI KQQLQELLFQ KSVDLISDVE GSIEDSNDFG SIVASIRDLD  180
ITPANIRSYL PKVNWERLAS MYVTGHSGAE CESRWLNCED PLINHHPWGK MEDKKLLHIV  240
QERGINNWIE IAVLLGTNRT PFQCLARYQR SLNASILKRE WTEDEDNKLR AAVEALGESN  300
WQSVASTLEG RTGTQCSNRW IKSLHPARQK VGRWTKDEDK RLKVAVMLFG PKTWKKVAKF  360
VLGRTHVQCR ERWFNSLDPA LNMGRWTEDE DSKLKAAISE HGYCWSKVAS CVPPRTDNQC  420
RRRWKVLLPH EVPLLQAARR IQKAALISNF VDRESERPAL GPNDFIPLAL TNTVSESENV  480
NLAGKQKRKS RRRSGSKANR KVSRSKRPTK ETEISYKEVL LLTDGNEVEN FAGEGVISNK  540
RVMKLRPRKK RSYEPNEDVI GNGLEVRQFD GVTKKRRSLG RRKRTFSGRP EVNEIDDSMK  600
ERTMEPCSKK NKGTGLTKAH LSAYEDSELL VMTNGEDVGE RGGDAIAKNK KEIKPGRRKR  660
KRAEPLDGIS GIINSANIVK NKKPSSPHLQ DECTDPTQDH SSSCPDSTPL MITNGNEVEA  720
FGDNGERKNN TLKLGSRNSK YSRLLQELSE INDSIEVETL DGCDAIVKKK RVTKQSLKKC  780
SDPNHSFSSE SFTETDNEVE AFVGNDATKK RRASKPHSMS KCTDHIETSG VENTTLHRKR  840
RAKLQPNQSE TTELVEVSER ISLSQKCSTY VLLDNDNSRA SGVCTQERLK RSRTSESCSN  900
HTLEAEDGDD DMTLACFIKN NVKRRRLKLA EKGNDISSHL EDQPGTIAGE INCGKSRLVA  960
GGTLAFHESL IEPLSIDVEG VFEDGDDDPS DTSSPPPGFE NPIYGRSPS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	486	492	QKRKSRR
2	540	551	KRVMKLRPRKKR
3	574	612	KKRRSLGRRKRTFSGRPEVNEIDDSMKERTMEPCSKKNK
4	575	584	KRRSLGRRKR
5	581	612	RRKRTFSGRPEVNEIDDSMKERTMEPCSKKNK
6	657	662	RRKRKR
7	923	927	KRRRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18100.2	0.0	MYB family protein