PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028073467.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

MYB

Protein Properties

Length: 1113aa MW: 125823 Da PI: 9.5372

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028073467.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.1	9.9e-09	331	374	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +W + Ed++l++ v++ G ++W Ia +g++Rt+ qc r+q XP_028073467.1 331 PWGKMEDKKLLHIVQERGINNWIEIAVLLGTNRTPFQCLARYQR 374 7*****************************************96 PP
2	Myb_DNA-binding	45.2	2.2e-14	383	426	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 WT++Ed +l av+ lG +W ++a+t+ gRt+ qc +rw k XP_028073467.1 383 REWTEDEDNKLRAAVEALGESNWQSVASTLE-GRTGTQCSNRWIK 426 68***************************.*********87 PP
3	Myb_DNA-binding	51.1	3.1e-16	436	479	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 grWT++Ed++l+ av ++G++tWk++a+ + gRt qc++rw++ XP_028073467.1 436 GRWTKDEDKRLKVAVMLFGPKTWKKVAKFVL-GRTHVQCRERWFN 479 8***************************9.*********98 PP
4	Myb_DNA-binding	50.6	4.5e-16	488	532	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 grWT++Ed +l+ a+ ++G W+++a++++ Rt++qc+ rw +l XP_028073467.1 488 GRWTEDEDSKLKAAISEHGYC-WSKVASCVP-PRTDNQCRRRWKVLL 532 8****************99.*****.9********9875 PP

Sequence ? help Back to Top
Protein Sequence Length: 1113 aa Download sequence
MWHIFHKRGG YIYLWNLYII KDSLKSSTEN DLKKLEQVQA TNVALEKETS TNVVVDRINV 60 SQGFPDSLDV YNTSQNSESV NEIIPGIWPS GLIEWHQPDE HNLAMISPRD SSFPKSAQMF 120 VDAIKKNRAC QKFLRSKMIQ IEARIEENKK LKQRVKILKD FQVTCKKRTG RALSQKKDAR 180 VQLISAKKPR TNSKVNGKKV SALYYGPDEN CHVPIYRMVL TKFPISLSRE KWSDEERTNL 240 AKGIKQQLQE LLFQKSVDLI SDVEGSIEDS NDFGSIVASI RDLDITPANI RSYLPKVNWE 300 RLASMYVTGH SGAECESRWL NCEDPLINHH PWGKMEDKKL LHIVQERGIN NWIEIAVLLG 360 TNRTPFQCLA RYQRSLNASI LKREWTEDED NKLRAAVEAL GESNWQSVAS TLEGRTGTQC 420 SNRWIKSLHP ARQKVGRWTK DEDKRLKVAV MLFGPKTWKK VAKFVLGRTH VQCRERWFNS 480 LDPALNMGRW TEDEDSKLKA AISEHGYCWS KVASCVPPRT DNQCRRRWKV LLPHEVPLLQ 540 AARRIQKAAL ISNFVDRESE RPALGPNDFI PLALTNTVSE SENVNLAGKQ KRKSRRRSGS 600 KANRKVSRSK RPTKETEISY KEVLLLTDGN EVENFAGEGV ISNKRVMKLR PRKKRSYEPN 660 EDVIGNGLEV RQFDGVTKKR RSLGRRKRTF SGRPEVNEID DSMKERTMEP CSKKNKGTGL 720 TKAHLSAYED SELLVMTNGE DVGERGGDAI AKNKKEIKPG RRKRKRAEPL DGISGIINSA 780 NIVKNKKPSS PHLQDECTDP TQDHSSSCPD STPLMITNGN EVEAFGDNGE RKNNTLKLGS 840 RNSKYSRLLQ ELSEINDSIE VETLDGCDAI VKKKRVTKQS LKKCSDPNHS FSSESFTETD 900 NEVEAFVGND ATKKRRASKP HSMSKCTDHI ETSGVENTTL HRKRRAKLQP NQSETTELVE 960 VSERISLSQK CSTYVLLDND NSRASGVCTQ ERLKRSRTSE SCSNHTLEAE DGDDDMTLAC 1020 FIKNNVKRRR LKLAEKGNDI SSHLEDQPGT IAGEINCGKS RLVAGGTLAF HESLIEPLSI 1080 DVEGVFEDGD DDPSDTSSPP PGFENPIYGR SPS

Sequence ? help Back to Top

Protein Sequence Length: 1113 aa Download sequence

MWHIFHKRGG YIYLWNLYII KDSLKSSTEN DLKKLEQVQA TNVALEKETS TNVVVDRINV  60
SQGFPDSLDV YNTSQNSESV NEIIPGIWPS GLIEWHQPDE HNLAMISPRD SSFPKSAQMF  120
VDAIKKNRAC QKFLRSKMIQ IEARIEENKK LKQRVKILKD FQVTCKKRTG RALSQKKDAR  180
VQLISAKKPR TNSKVNGKKV SALYYGPDEN CHVPIYRMVL TKFPISLSRE KWSDEERTNL  240
AKGIKQQLQE LLFQKSVDLI SDVEGSIEDS NDFGSIVASI RDLDITPANI RSYLPKVNWE  300
RLASMYVTGH SGAECESRWL NCEDPLINHH PWGKMEDKKL LHIVQERGIN NWIEIAVLLG  360
TNRTPFQCLA RYQRSLNASI LKREWTEDED NKLRAAVEAL GESNWQSVAS TLEGRTGTQC  420
SNRWIKSLHP ARQKVGRWTK DEDKRLKVAV MLFGPKTWKK VAKFVLGRTH VQCRERWFNS  480
LDPALNMGRW TEDEDSKLKA AISEHGYCWS KVASCVPPRT DNQCRRRWKV LLPHEVPLLQ  540
AARRIQKAAL ISNFVDRESE RPALGPNDFI PLALTNTVSE SENVNLAGKQ KRKSRRRSGS  600
KANRKVSRSK RPTKETEISY KEVLLLTDGN EVENFAGEGV ISNKRVMKLR PRKKRSYEPN  660
EDVIGNGLEV RQFDGVTKKR RSLGRRKRTF SGRPEVNEID DSMKERTMEP CSKKNKGTGL  720
TKAHLSAYED SELLVMTNGE DVGERGGDAI AKNKKEIKPG RRKRKRAEPL DGISGIINSA  780
NIVKNKKPSS PHLQDECTDP TQDHSSSCPD STPLMITNGN EVEAFGDNGE RKNNTLKLGS  840
RNSKYSRLLQ ELSEINDSIE VETLDGCDAI VKKKRVTKQS LKKCSDPNHS FSSESFTETD  900
NEVEAFVGND ATKKRRASKP HSMSKCTDHI ETSGVENTTL HRKRRAKLQP NQSETTELVE  960
VSERISLSQK CSTYVLLDND NSRASGVCTQ ERLKRSRTSE SCSNHTLEAE DGDDDMTLAC  1020
FIKNNVKRRR LKLAEKGNDI SSHLEDQPGT IAGEINCGKS RLVAGGTLAF HESLIEPLSI  1080
DVEGVFEDGD DDPSDTSSPP PGFENPIYGR SPS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	590	596	QKRKSRR
2	644	655	KRVMKLRPRKKR
3	678	716	KKRRSLGRRKRTFSGRPEVNEIDDSMKERTMEPCSKKNK
4	679	688	KRRSLGRRKR
5	685	716	RRKRTFSGRPEVNEIDDSMKERTMEPCSKKNK
6	761	766	RRKRKR
7	1027	1031	KRRRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18100.2	0.0	MYB family protein