PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028073466.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

MYB

Protein Properties

Length: 1208aa MW: 135672 Da PI: 8.0888

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028073466.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26.9	1.1e-08	426	469	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +W + Ed++l++ v++ G ++W Ia +g++Rt+ qc r+q XP_028073466.1 426 PWGKMEDKKLLHIVQERGINNWIEIAVLLGTNRTPFQCLARYQR 469 7*****************************************96 PP
2	Myb_DNA-binding	45	2.4e-14	478	521	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 WT++Ed +l av+ lG +W ++a+t+ gRt+ qc +rw k XP_028073466.1 478 REWTEDEDNKLRAAVEALGESNWQSVASTLE-GRTGTQCSNRWIK 521 68***************************.*********87 PP
3	Myb_DNA-binding	51	3.4e-16	531	574	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 grWT++Ed++l+ av ++G++tWk++a+ + gRt qc++rw++ XP_028073466.1 531 GRWTKDEDKRLKVAVMLFGPKTWKKVAKFVL-GRTHVQCRERWFN 574 8***************************9.*********98 PP
4	Myb_DNA-binding	50.5	4.9e-16	583	627	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 grWT++Ed +l+ a+ ++G W+++a++++ Rt++qc+ rw +l XP_028073466.1 583 GRWTEDEDSKLKAAISEHGYC-WSKVASCVP-PRTDNQCRRRWKVLL 627 8****************99.*****.9********9875 PP

Sequence ? help Back to Top
Protein Sequence Length: 1208 aa Download sequence
MVSNADEDDE FSGSDSDEGF NEDMEALRRA CILTGTDPQA LDTSVATGGV AAASDSDEED 60 LELVRGIQQR LTACNHAEAP LFLKPLCTLP PAASDDDEDD FETLRAIQRR FEGYDKDSLK 120 SSTENDLKKL EQVQATNVAL EKETSTNVVV DRINVSQGFP DSLDVYNTSQ NSESVNEIIP 180 GIWPSGLIEW HQPDEHNLAM ISPRDSSFPK SAQMFVDAIK KNRACQKFLR SKMIQIEARI 240 EENKKLKQRV KILKDFQVTC KKRTGRALSQ KKDARVQLIS AKKPRTNSKV NGKKVSALYY 300 GPDENCHVPI YRMVLTKFPI SLSREKWSDE ERTNLAKGIK QQLQELLFQK SVDLISDVEG 360 SIEDSNDFGS IVASIRDLDI TPANIRSYLP KVNWERLASM YVTGHSGAEC ESRWLNCEDP 420 LINHHPWGKM EDKKLLHIVQ ERGINNWIEI AVLLGTNRTP FQCLARYQRS LNASILKREW 480 TEDEDNKLRA AVEALGESNW QSVASTLEGR TGTQCSNRWI KSLHPARQKV GRWTKDEDKR 540 LKVAVMLFGP KTWKKVAKFV LGRTHVQCRE RWFNSLDPAL NMGRWTEDED SKLKAAISEH 600 GYCWSKVASC VPPRTDNQCR RRWKVLLPHE VPLLQAARRI QKAALISNFV DRESERPALG 660 PNDFIPLALT NTVSESENVN LAGKQKRKSR RRSGSKANRK VSRSKRPTKE TEISYKEVLL 720 LTDGNEVENF AGEGVISNKR VMKLRPRKKR SYEPNEDVIG NGLEVRQFDG VTKKRRSLGR 780 RKRTFSGRPE VNEIDDSMKE RTMEPCSKKN KGTGLTKAHL SAYEDSELLV MTNGEDVGER 840 GGDAIAKNKK EIKPGRRKRK RAEPLDGISG IINSANIVKN KKPSSPHLQD ECTDPTQDHS 900 SSCPDSTPLM ITNGNEVEAF GDNGERKNNT LKLGSRNSKY SRLLQELSEI NDSIEVETLD 960 GCDAIVKKKR VTKQSLKKCS DPNHSFSSES FTETDNEVEA FVGNDATKKR RASKPHSMSK 1020 CTDHIETSGV ENTTLHRKRR AKLQPNQSET TELVEVSERI SLSQKCSTYV LLDNDNSRAS 1080 GVCTQERLKR SRTSESCSNH TLEAEDGDDD MTLACFIKNN VKRRRLKLAE KGNDISSHLE 1140 DQPGTIAGEI NCGKSRLVAG GTLAFHESLI EPLSIDVEGV FEDGDDDPSD TSSPPPGFEN 1200 PIYGRSPS

Sequence ? help Back to Top

Protein Sequence Length: 1208 aa Download sequence

MVSNADEDDE FSGSDSDEGF NEDMEALRRA CILTGTDPQA LDTSVATGGV AAASDSDEED  60
LELVRGIQQR LTACNHAEAP LFLKPLCTLP PAASDDDEDD FETLRAIQRR FEGYDKDSLK  120
SSTENDLKKL EQVQATNVAL EKETSTNVVV DRINVSQGFP DSLDVYNTSQ NSESVNEIIP  180
GIWPSGLIEW HQPDEHNLAM ISPRDSSFPK SAQMFVDAIK KNRACQKFLR SKMIQIEARI  240
EENKKLKQRV KILKDFQVTC KKRTGRALSQ KKDARVQLIS AKKPRTNSKV NGKKVSALYY  300
GPDENCHVPI YRMVLTKFPI SLSREKWSDE ERTNLAKGIK QQLQELLFQK SVDLISDVEG  360
SIEDSNDFGS IVASIRDLDI TPANIRSYLP KVNWERLASM YVTGHSGAEC ESRWLNCEDP  420
LINHHPWGKM EDKKLLHIVQ ERGINNWIEI AVLLGTNRTP FQCLARYQRS LNASILKREW  480
TEDEDNKLRA AVEALGESNW QSVASTLEGR TGTQCSNRWI KSLHPARQKV GRWTKDEDKR  540
LKVAVMLFGP KTWKKVAKFV LGRTHVQCRE RWFNSLDPAL NMGRWTEDED SKLKAAISEH  600
GYCWSKVASC VPPRTDNQCR RRWKVLLPHE VPLLQAARRI QKAALISNFV DRESERPALG  660
PNDFIPLALT NTVSESENVN LAGKQKRKSR RRSGSKANRK VSRSKRPTKE TEISYKEVLL  720
LTDGNEVENF AGEGVISNKR VMKLRPRKKR SYEPNEDVIG NGLEVRQFDG VTKKRRSLGR  780
RKRTFSGRPE VNEIDDSMKE RTMEPCSKKN KGTGLTKAHL SAYEDSELLV MTNGEDVGER  840
GGDAIAKNKK EIKPGRRKRK RAEPLDGISG IINSANIVKN KKPSSPHLQD ECTDPTQDHS  900
SSCPDSTPLM ITNGNEVEAF GDNGERKNNT LKLGSRNSKY SRLLQELSEI NDSIEVETLD  960
GCDAIVKKKR VTKQSLKKCS DPNHSFSSES FTETDNEVEA FVGNDATKKR RASKPHSMSK  1020
CTDHIETSGV ENTTLHRKRR AKLQPNQSET TELVEVSERI SLSQKCSTYV LLDNDNSRAS  1080
GVCTQERLKR SRTSESCSNH TLEAEDGDDD MTLACFIKNN VKRRRLKLAE KGNDISSHLE  1140
DQPGTIAGEI NCGKSRLVAG GTLAFHESLI EPLSIDVEGV FEDGDDDPSD TSSPPPGFEN  1200
PIYGRSPS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	685	691	QKRKSRR
2	739	750	KRVMKLRPRKKR
3	773	811	KKRRSLGRRKRTFSGRPEVNEIDDSMKERTMEPCSKKNK
4	774	783	KRRSLGRRKR
5	780	811	RRKRTFSGRPEVNEIDDSMKERTMEPCSKKNK
6	856	861	RRKRKR
7	1122	1126	KRRRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18100.1	0.0	MYB family protein