PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028073425.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

MYB

Protein Properties

Length: 356aa MW: 40763.2 Da PI: 6.3954

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028073425.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49.3	1.1e-15	93	138	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l+++v+ +G+ +W+ Ia+++ gR++k+c++rw++ XP_028073425.1 93 RGHWRPAEDTKLKELVAVYGPQNWNVIAEKLE-GRSGKSCRLRWFNQ 138 899***************************.*********996 PP
2	Myb_DNA-binding	53.7	4.7e-17	145	188	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r+++ +eE+e+l a++++G++ W+ Iar ++ gRt++ +k++w+ XP_028073425.1 145 RKAFNEEEEERLMSAHRLYGNK-WAMIARLLP-GRTDNAVKNHWHV 188 7899****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence
MEMVFTATTS VSSSQESSFC KSSTEMEYGR ASWGFQQTHN NSSDDCSDGF GENNETIDLN 60 ESLNEEEMIK DGINGESVGK ERENGGQSKL CGRGHWRPAE DTKLKELVAV YGPQNWNVIA 120 EKLEGRSGKS CRLRWFNQLD PRINRKAFNE EEEERLMSAH RLYGNKWAMI ARLLPGRTDN 180 AVKNHWHVIM ARKYREQSSA YRRRKIAQSV HTRLEGEDPS IVYRVTEPPS QPYRVNLCSS 240 NVSLPRNGFC ALQTPDFHSG PNSHEKVDIF NQNRAWERSV DDKEAKVAYF YPHHQPPLMM 300 TAMQQSLYHH YSSSSHCSVT EPLSSPLTDE EYRRETNHLE TVVEPTFIDF LGVGTT

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence

MEMVFTATTS VSSSQESSFC KSSTEMEYGR ASWGFQQTHN NSSDDCSDGF GENNETIDLN  60
ESLNEEEMIK DGINGESVGK ERENGGQSKL CGRGHWRPAE DTKLKELVAV YGPQNWNVIA  120
EKLEGRSGKS CRLRWFNQLD PRINRKAFNE EEEERLMSAH RLYGNKWAMI ARLLPGRTDN  180
AVKNHWHVIM ARKYREQSSA YRRRKIAQSV HTRLEGEDPS IVYRVTEPPS QPYRVNLCSS  240
NVSLPRNGFC ALQTPDFHSG PNSHEKVDIF NQNRAWERSV DDKEAKVAYF YPHHQPPLMM  300
TAMQQSLYHH YSSSSHCSVT EPLSSPLTDE EYRRETNHLE TVVEPTFIDF LGVGTT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69560.1	8e-76	MYB family protein