PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028072990.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

Trihelix

Protein Properties

Length: 613aa MW: 68276.8 Da PI: 8.4245

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028072990.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	81.9	8.4e-26	301	382	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W ++e++ Li +rre++ ++++k++k+lW+++s+kmre+gf rs+++C++kw+nl k++kk k+++++ +s +++y+++le XP_028072990.1 301 WVQEETRSLISFRREVDGLFNTSKSNKHLWDQISAKMREKGFDRSATMCTDKWRNLLKEFKKAKHQDRSS---ASAKMSYYKELE 382 ******************************************************************85...56689***98 PP

Sequence ? help Back to Top
Protein Sequence Length: 613 aa Download sequence
MLTMENKSQN TISNSASNSK NPPDTVSHGM QPQIAGNQGQ SLSNPMVANQ SQSRQPLLSQ 60 NIQNNITATG VPGSANLTSA LPSVGGLPQT SIPNVGQNSN LQNIQNISGV SQNSVANSMG 120 QGVSSNIFAN TQRQMPGRPQ QVVPQQQQQQ SQNPQHYLYP QHFQQQLLNK KYPPGSIPPH 180 MQSHIQQQQT QQQQNLLQSS QQSVMQPSSM QPAPLSGLQQ NQQSSVQQST QPMLQQNPQS 240 VLRQQQQPQQ TPIIHQQQTP MQPQPILPTQ QQQQQQQMIL GDSSGGEDHE VKAPKKRAET 300 WVQEETRSLI SFRREVDGLF NTSKSNKHLW DQISAKMREK GFDRSATMCT DKWRNLLKEF 360 KKAKHQDRSS ASAKMSYYKE LEELLRDRSK NGPYKSPSSS KVDLYIQFSD KGLEDGNIPF 420 GPVEAGGQST VNLERPLDHD GDPLAITAAD AVAASGVPPW NWRETPVNGG EGHSAYGGRV 480 ITVKWGEHIR RIGIDGTADA IKEAIRSAFR LRTKRAFCLE DEDNVIRSLD RNMPLGNYTL 540 HLDEGISIKV CLYDDSDRMA VRTEDKTLYT EDEFRDFLSR NGFTGLREIN GYRTFDNLDD 600 LRPGGMYQGV SSG

Sequence ? help Back to Top

Protein Sequence Length: 613 aa Download sequence

MLTMENKSQN TISNSASNSK NPPDTVSHGM QPQIAGNQGQ SLSNPMVANQ SQSRQPLLSQ  60
NIQNNITATG VPGSANLTSA LPSVGGLPQT SIPNVGQNSN LQNIQNISGV SQNSVANSMG  120
QGVSSNIFAN TQRQMPGRPQ QVVPQQQQQQ SQNPQHYLYP QHFQQQLLNK KYPPGSIPPH  180
MQSHIQQQQT QQQQNLLQSS QQSVMQPSSM QPAPLSGLQQ NQQSSVQQST QPMLQQNPQS  240
VLRQQQQPQQ TPIIHQQQTP MQPQPILPTQ QQQQQQQMIL GDSSGGEDHE VKAPKKRAET  300
WVQEETRSLI SFRREVDGLF NTSKSNKHLW DQISAKMREK GFDRSATMCT DKWRNLLKEF  360
KKAKHQDRSS ASAKMSYYKE LEELLRDRSK NGPYKSPSSS KVDLYIQFSD KGLEDGNIPF  420
GPVEAGGQST VNLERPLDHD GDPLAITAAD AVAASGVPPW NWRETPVNGG EGHSAYGGRV  480
ITVKWGEHIR RIGIDGTADA IKEAIRSAFR LRTKRAFCLE DEDNVIRSLD RNMPLGNYTL  540
HLDEGISIKV CLYDDSDRMA VRTEDKTLYT EDEFRDFLSR NGFTGLREIN GYRTFDNLDD  600
LRPGGMYQGV SSG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13450.1	1e-165	Trihelix family protein