PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028072988.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

Trihelix

Protein Properties

Length: 698aa MW: 78060 Da PI: 9.0718

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028072988.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	81.7	1e-25	386	467	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W ++e++ Li +rre++ ++++k++k+lW+++s+kmre+gf rs+++C++kw+nl k++kk k+++++ +s +++y+++le XP_028072988.1 386 WVQEETRSLISFRREVDGLFNTSKSNKHLWDQISAKMREKGFDRSATMCTDKWRNLLKEFKKAKHQDRSS---ASAKMSYYKELE 467 ******************************************************************85...56689***98 PP

Sequence ? help Back to Top
Protein Sequence Length: 698 aa Download sequence
METNNWRPAP GGGEPTMDPG DWRTQLQPDS RQRIVNKIMD TLKRHLPFSG QEGLQELKKI 60 AVRFEEKIYT AATSQSDYLR KISLKMLTME NKSQNTISNS ASNSKNPPDT VSHGMQPQIA 120 GNQGQSLSNP MVANQSQSRQ PLLSQNIQNN ITATGVPGSA NLTSALPSVG GLPQTSIPNV 180 GQNSNLQNIQ NISGVSQNSV ANSMGQGVSS NIFANTQRQM PGRPQQVVPQ QQQQQSQNPQ 240 HYLYPQHFQQ QLLNKKYPPG SIPPHMQSHI QQQQTQQQQN LLQSSQQSVM QPSSMQPAPL 300 SGLQQNQQSS VQQSTQPMLQ QNPQSVLRQQ QQPQQTPIIH QQQTPMQPQP ILPTQQQQQQ 360 QQMILGDSSG GEDHEVKAPK KRAETWVQEE TRSLISFRRE VDGLFNTSKS NKHLWDQISA 420 KMREKGFDRS ATMCTDKWRN LLKEFKKAKH QDRSSASAKM SYYKELEELL RDRSKNGPYK 480 SPSSSKVDLY IQFSDKGLED GNIPFGPVEA GGQSTVNLER PLDHDGDPLA ITAADAVAAS 540 GVPPWNWRET PVNGGEGHSA YGGRVITVKW GEHIRRIGID GTADAIKEAI RSAFRLRTKR 600 AFCLEDEDNV IRSLDRNMPL GNYTLHLDEG ISIKVCLYDD SDRMAVRTED KTLYTEDEFR 660 DFLSRNGFTG LREINGYRTF DNLDDLRPGG MYQGVSSG

Sequence ? help Back to Top

Protein Sequence Length: 698 aa Download sequence

METNNWRPAP GGGEPTMDPG DWRTQLQPDS RQRIVNKIMD TLKRHLPFSG QEGLQELKKI  60
AVRFEEKIYT AATSQSDYLR KISLKMLTME NKSQNTISNS ASNSKNPPDT VSHGMQPQIA  120
GNQGQSLSNP MVANQSQSRQ PLLSQNIQNN ITATGVPGSA NLTSALPSVG GLPQTSIPNV  180
GQNSNLQNIQ NISGVSQNSV ANSMGQGVSS NIFANTQRQM PGRPQQVVPQ QQQQQSQNPQ  240
HYLYPQHFQQ QLLNKKYPPG SIPPHMQSHI QQQQTQQQQN LLQSSQQSVM QPSSMQPAPL  300
SGLQQNQQSS VQQSTQPMLQ QNPQSVLRQQ QQPQQTPIIH QQQTPMQPQP ILPTQQQQQQ  360
QQMILGDSSG GEDHEVKAPK KRAETWVQEE TRSLISFRRE VDGLFNTSKS NKHLWDQISA  420
KMREKGFDRS ATMCTDKWRN LLKEFKKAKH QDRSSASAKM SYYKELEELL RDRSKNGPYK  480
SPSSSKVDLY IQFSDKGLED GNIPFGPVEA GGQSTVNLER PLDHDGDPLA ITAADAVAAS  540
GVPPWNWRET PVNGGEGHSA YGGRVITVKW GEHIRRIGID GTADAIKEAI RSAFRLRTKR  600
AFCLEDEDNV IRSLDRNMPL GNYTLHLDEG ISIKVCLYDD SDRMAVRTED KTLYTEDEFR  660
DFLSRNGFTG LREINGYRTF DNLDDLRPGG MYQGVSSG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13450.1	1e-163	Trihelix family protein