PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_028071683.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 842aa MW: 92544.1 Da PI: 6.1852 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58 | 1.6e-18 | 20 | 78 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le++++ +++ps +r++L +++ +++ +q+kvWFqNrR +ek+ XP_028071683.1 20 KYVRYTPEQVEALERVYHDCPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 78 5679*****************************************************97 PP | |||||||
2 | START | 171 | 7.7e-54 | 165 | 373 | 2 | 205 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEE CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlm 94 +aee+++e+++ka+ ++ Wv+++ +++g++++ +++ s++++g a+ra+g+v +++ v+e+l+ ++ W ++++ +++l+v s+g g+++l XP_028071683.1 165 IAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIIAISRGCTGVAARACGLVGLEPT-RVAEILKNRPSWYHDCRVVDVLNVMSTGngGTIELL 258 789*******************************************************.7777777777************************** PP EEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS START 95 vaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185 +++l+a+++l+p Rdf+ +Ry+ l++g++v++++S++++q+ p+ +++vRae+lpSg+li+p+++g+s +++v+h dl+ +++++lr+l+ XP_028071683.1 259 YMQLYAPTTLAPaRDFWLLRYTSVLEDGSLVVCERSLNNTQNGPSmppVQHFVRAEMLPSGYLIRPCEGGGSIIHIVDHLDLEPLSVPEVLRPLY 353 *******************************************9988899********************************************* PP HHHHHHHHHHHHHHTXXXXX CS START 186 ksglaegaktwvatlqrqce 205 +s++ ++ ++a+l+++++ XP_028071683.1 354 ESSTLLSQRATMAALRQLRQ 373 ****************9876 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 842 aa Download sequence |
MMAVTSACKE GKMGMMDNGK YVRYTPEQVE ALERVYHDCP KPSSLRRQQL IRECPILSNI 60 EPKQIKVWFQ NRRCREKQRK ESSRLQAVNR KLTAMNKLLM EENDRLQKQV SQLVYENGHF 120 RQQTRNANLA TTDTSCESVV TRSGQNHLTP QHPPRDASPA GLLSIAEETL TEFLSKATGT 180 AVEWVQMPGM KPGPDSIGII AISRGCTGVA ARACGLVGLE PTRVAEILKN RPSWYHDCRV 240 VDVLNVMSTG NGGTIELLYM QLYAPTTLAP ARDFWLLRYT SVLEDGSLVV CERSLNNTQN 300 GPSMPPVQHF VRAEMLPSGY LIRPCEGGGS IIHIVDHLDL EPLSVPEVLR PLYESSTLLS 360 QRATMAALRQ LRQISQEVSQ PTVTGWGRRP VALRALSQRL NKGFNEAVNG FTDEGWSMIE 420 SDGIDDVTIL VNSSPGKLMG ADPSHANGFP SMSNAVLCAK ASMLLQDVPP AILVRFLREH 480 RSEWADSGID SYSAAAIKAG PYSLPGTLAR SFGGQVILPL AHTIEHEEFM EVIKLENFGH 540 YRDDVIMPGD IFLLQLCSGV DENAVGACAE LIFAPIDASF SDDAPLLPSG FRIIPLDSGM 600 DASSPNRTLD LASALEVGPT GNRGSGDYSG HGGSGKSVMT IAFQFAFEIH LQENIAAMAR 660 LYVRSIIASV QRVALALYPS RFSSDVGLRP PPVPPEAHTV ARWICLSYRC FLGVELIKPV 720 NEGSESILKT LWHHSDAVMC CSLKALPVFT FANQAGLDLL ETTLVALQDI ALERILDDHG 780 KKTLFSELPQ IMQQGFACLE GGVCLSSMGR PVSYERAVAW KVLDDEEAAH CICFMFINWS 840 FV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G52150.1 | 0.0 | HD-ZIP family protein |