PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028071682.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family HD-ZIP
Protein Properties Length: 845aa    MW: 92934.6 Da    PI: 6.1852
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028071682.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox581.6e-182078357
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                    k  ++t+eq+e+Le++++ +++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  XP_028071682.1 20 KYVRYTPEQVEALERVYHDCPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 78
                    5679*****************************************************97 PP
2START1717.8e-541653732205
                     HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlm 94 
                     +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++  v+e+l+ ++ W ++++ +++l+v s+g  g+++l 
  XP_028071682.1 165 IAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIIAISRGCTGVAARACGLVGLEPT-RVAEILKNRPSWYHDCRVVDVLNVMSTGngGTIELL 258
                     789*******************************************************.7777777777************************** PP

                     EEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS
           START  95 vaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185
                     +++l+a+++l+p Rdf+ +Ry+  l++g++v++++S++++q+ p+    +++vRae+lpSg+li+p+++g+s +++v+h dl+  +++++lr+l+
  XP_028071682.1 259 YMQLYAPTTLAPaRDFWLLRYTSVLEDGSLVVCERSLNNTQNGPSmppVQHFVRAEMLPSGYLIRPCEGGGSIIHIVDHLDLEPLSVPEVLRPLY 353
                     *******************************************9988899********************************************* PP

                     HHHHHHHHHHHHHHTXXXXX CS
           START 186 ksglaegaktwvatlqrqce 205
                     +s++   ++ ++a+l+++++
  XP_028071682.1 354 ESSTLLSQRATMAALRQLRQ 373
                     ****************9876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 845 aa     Download sequence    
MMAVTSACKE GKMGMMDNGK YVRYTPEQVE ALERVYHDCP KPSSLRRQQL IRECPILSNI  60
EPKQIKVWFQ NRRCREKQRK ESSRLQAVNR KLTAMNKLLM EENDRLQKQV SQLVYENGHF  120
RQQTRNANLA TTDTSCESVV TRSGQNHLTP QHPPRDASPA GLLSIAEETL TEFLSKATGT  180
AVEWVQMPGM KPGPDSIGII AISRGCTGVA ARACGLVGLE PTRVAEILKN RPSWYHDCRV  240
VDVLNVMSTG NGGTIELLYM QLYAPTTLAP ARDFWLLRYT SVLEDGSLVV CERSLNNTQN  300
GPSMPPVQHF VRAEMLPSGY LIRPCEGGGS IIHIVDHLDL EPLSVPEVLR PLYESSTLLS  360
QRATMAALRQ LRQISQEVSQ PTVTGWGRRP VALRALSQRL NKGFNEAVNG FTDEGWSMIE  420
SDGIDDVTIL VNSSPGKLMG ADPSHANGFP SMSNAVLCAK ASMLLQDVPP AILVRFLREH  480
RSEWADSGID SYSAAAIKAG PYSLPGTLAR SFGGQVILPL AHTIEHEEFM EVIKLENFGH  540
YRDDVIMPGD IFLLQLCSGV DENAVGACAE LIFAPIDASF SDDAPLLPSG FRIIPLDSGM  600
MMQDASSPNR TLDLASALEV GPTGNRGSGD YSGHGGSGKS VMTIAFQFAF EIHLQENIAA  660
MARLYVRSII ASVQRVALAL YPSRFSSDVG LRPPPVPPEA HTVARWICLS YRCFLGVELI  720
KPVNEGSESI LKTLWHHSDA VMCCSLKALP VFTFANQAGL DLLETTLVAL QDIALERILD  780
DHGKKTLFSE LPQIMQQGFA CLEGGVCLSS MGRPVSYERA VAWKVLDDEE AAHCICFMFI  840
NWSFV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.20.0HD-ZIP family protein