PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028069038.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family HD-ZIP
Protein Properties Length: 810aa    MW: 88033.1 Da    PI: 6.3948
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028069038.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox67.51.7e-21118173156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     +++ +++t++q++eLe+lF+++++p++++r eL+k+l L++rqVk+WFqNrR+++k
  XP_028069038.1 118 KKRYHRHTPQQIQELEALFKECPHPDEKQRSELSKRLCLETRQVKFWFQNRRTQMK 173
                     688999***********************************************999 PP
2START202.71.5e-633165411206
                     HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS
           START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 
                     ela++a++elvk+a+ +ep+W++s     e+ n +e+l++f++  +     + +ea+r++g+v+ ++  lve+l+d++ +W e+++    + +t+
  XP_028069038.1 316 ELALAAMEELVKMAQTDEPLWFRSFeggrEIMNHEEYLRTFTPCIGlkpngFVTEASRETGMVIINSLALVETLMDSN-RWAEMFPcmiaRTTTT 409
                     5899*********************9****************99989*9*9***************************.**************** PP

                     EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--..-TTSEE-EESSEEEEEEEECTCEEEEEEEE- CS
           START  83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.sssvvRaellpSgiliepksnghskvtwveh 169
                     +vis g      galqlm aelq+lsplvp R++ f+R+++q+ +g+w++vd S+d+ ++ +   + +v +++lpSg+++++++ng+skvtw+eh
  XP_028069038.1 410 DVISGGmggtrnGALQLMHAELQVLSPLVPvREVNFLRFCKQHAEGVWAVVDLSIDHIRETSGaPPTFVSCRRLPSGCVVQDMPNGYSKVTWIEH 504
                     ************************************************************999999***************************** PP

                     EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 170 vdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                     +++++r++h l+r+l++ g+ +ga++wvatlqrqce+
  XP_028069038.1 505 AEYDERVIHHLYRPLISGGMGFGAQRWVATLQRQCEC 541
                     ***********************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 810 aa     Download sequence    
MSFGGFLDNH SGGGGGGARI VADIPYSNNH NMPTGVISQQ RLVSPSLAKS MFNSPGLSLA  60
LQTSMESQGE ATRIQENYET NVGRRSRSEA DHESRSGSDN MDGGSGDDLD GADKPPRKKR  120
YHRHTPQQIQ ELEALFKECP HPDEKQRSEL SKRLCLETRQ VKFWFQNRRT QMKTQLERHE  180
NSILRQENDK LRAENMSIRE AMRNPICTNC GGPAIIGDIS LEEQHLRIEN ARLKDELDRV  240
CALAGKFLGR PISTLAASMP PGLPNSSLEL GVGSNGFGGL GTVATTLPLG PDFGISSGLP  300
VVAPPRAPAE RSIFLELALA AMEELVKMAQ TDEPLWFRSF EGGREIMNHE EYLRTFTPCI  360
GLKPNGFVTE ASRETGMVII NSLALVETLM DSNRWAEMFP CMIARTTTTD VISGGMGGTR  420
NGALQLMHAE LQVLSPLVPV REVNFLRFCK QHAEGVWAVV DLSIDHIRET SGAPPTFVSC  480
RRLPSGCVVQ DMPNGYSKVT WIEHAEYDER VIHHLYRPLI SGGMGFGAQR WVATLQRQCE  540
CLAILMSSSV PSRDHTAITA SGRRSMLKLA QRMTDNFCAG VCASTVHKWN KLSASNVDED  600
VRVMTSMSVD DPGEPPGIVL SAATSVWLPV SPQRLFDFLR DERLRSEWDI LSNGGPMQEM  660
AHIAKGQDHG NCVSLLRASA MNANQSSMLI LQETCIDAAG SLVVYAPVDI PAMHVVMNGG  720
DSAYVALLPS GFAIVPDGPE SRGPVGNGPA NGASGGVPAQ RVSGSLLTVA FQILVNSLPT  780
AKLTVESVET VNNLISCTVQ KIKAALHCES
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein