PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028068479.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family AP2
Protein Properties Length: 520aa    MW: 56067.4 Da    PI: 6.9169
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028068479.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2483e-15150209155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  XP_028068479.1 150 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqsRKgRQVYLGGYDKEEKAARAYDLAALKYWG 209
                     57*******************666664477446*************************98 PP
2AP247.25.4e-15252303155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  XP_028068479.1 252 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 303
                     57****************988532...5************************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 520 aa     Download sequence    
MDSSQNWLAF SLSNHHIPSH DSSHLSLFEA FNTTSNNPSG VVDRAEEDVR GGATELSILT  60
GGSGGGGGPK LEDFLGGGAT RTTDLCQFTG EAPTSVCETE IYDSELKTIA ASFLRGFSTD  120
PTDAQKQLAV APPPEPAAKK AVDTFGQRTS IYRGVTRHRW TGRYEAHLWD NSCRREGQSR  180
KGRQVYLGGY DKEEKAARAY DLAALKYWGP TTTTNFPVSN YEKEIEEMKN MTRQEFVASL  240
RRKSSGFSRG ASIYRGVTRH HQHGRWQARI GRVAGNKDLY LGTFSTQEEA AEAYDIAAIK  300
FRGLNAVTNF DMSRYDVKSI ANSNLPIGGI SGKSKTSSDS PSDNNKSLDG GVGTRRSDDR  360
DISSSSSLSF SSQPPSSISF ALPIKQVDNT VDYWSILGYT KSPSASSTNL FQGSNNGTST  420
FQGITPFSMD FPTNSTTTNV VHNNNGFFFN GGGGGGYFEQ QSASMSGSSG IPLGTPIALS  480
SNDSYEGGSG FGNWVGPSLH SFQSAKPNLS VFQTPIFGME
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.11e-132AP2 family protein