PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028068093.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

MYB

Protein Properties

Length: 343aa MW: 38316.8 Da PI: 6.1708

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028068093.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	48.6	1.8e-15	24	71	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l ++ + G g+W+ +ar g+ R++k+c++rw +yl XP_028068093.1 24 KGLWSPEEDEKLMNYMVRNGQGCWSDVARNAGLQRCGKSCRLRWINYL 71 678*******************************************97 PP
2	Myb_DNA-binding	50.5	4.8e-16	77	120	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+++++E++l+++++ +lG++ W+ Ia++++ gRt++++k++w++ XP_028068093.1 77 RGAFSPQEEDLIIHLHSLLGNR-WSQIAARLP-GRTDNEIKNFWNS 120 89******************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence
MRKPTTETTT GKNSSSNMMS KMRKGLWSPE EDEKLMNYMV RNGQGCWSDV ARNAGLQRCG 60 KSCRLRWINY LRPDLKRGAF SPQEEDLIIH LHSLLGNRWS QIAARLPGRT DNEIKNFWNS 120 TVKKRLKNSS SSTLSPNTSD SSSEPLIQGM MMTMREQNMM TMFMDSSSSS SSATRSMAVN 180 HPIDPLLPMF EQGLNMSSSS GCFNAPTFMP QVGMDVMMNG GGDHGFYGNH HGIYGGGGGG 240 NYINLGPERE LFVPPLESVS IEETKSSINR NTYNNNNNNN NNNPINNITN SVINHCNNNS 300 KVENMEGFES CWQGGEDLKV GEWDLEELMR DVSSFPCLDF QGE

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence

MRKPTTETTT GKNSSSNMMS KMRKGLWSPE EDEKLMNYMV RNGQGCWSDV ARNAGLQRCG  60
KSCRLRWINY LRPDLKRGAF SPQEEDLIIH LHSLLGNRWS QIAARLPGRT DNEIKNFWNS  120
TVKKRLKNSS SSTLSPNTSD SSSEPLIQGM MMTMREQNMM TMFMDSSSSS SSATRSMAVN  180
HPIDPLLPMF EQGLNMSSSS GCFNAPTFMP QVGMDVMMNG GGDHGFYGNH HGIYGGGGGG  240
NYINLGPERE LFVPPLESVS IEETKSSINR NTYNNNNNNN NNNPINNITN SVINHCNNNS  300
KVENMEGFES CWQGGEDLKV GEWDLEELMR DVSSFPCLDF QGE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12870.1	4e-67	MYB family protein