PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028065837.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

GRF

Protein Properties

Length: 559aa MW: 60178.8 Da PI: 8.3444

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028065837.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	77.2	1.6e-24	210	254	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e XP_028065837.1 210 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKPVEG 254 79****************************************985 PP
2	QLQ	62.9	8.4e-22	144	180	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+++L++Q+l+yKy+ an+P+P++Ll +i+k XP_028065837.1 144 GPFTPSQWMELEHQALIYKYITANMPIPHNLLIPIRK 180 59*********************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 559 aa Download sequence
MDLGMVGFDG LVGSDSCFGS SLSSDPDSTK QKWYGSGRFL GQERSAPASE DEWRTLKVAK 60 TDDFSASKAI LSQQRGSLLR ANSSSLLSDG QHMLSFSSPN SQSVTLPHYH QSSSSNSRNT 120 GYGSGGGGCL NLASMHGVLM GVRGPFTPSQ WMELEHQALI YKYITANMPI PHNLLIPIRK 180 ALDSAGFSSF TRPSTLGWGA FHLGFSNNTD PEPGRCRRTD GKKWRCSRDA VADQKYCERH 240 MNRGRHRSRK PVEGQSGHSV SGPTTTTTVK LASSTSAALV VPGDGTTNSL GLSHHPQLKN 300 LQPGAPNSCA STPHINSRFF LNNENVGETI QGATDLSMLS PTISLTPNQF SVPKQQNPYE 360 QSSRSEFGSV CSDSLLNPLH KSSTLNNCRN YSSPRNLNDG ESESQHSVHQ FMDDWHKTQL 420 SISIPVDASD FMSSTSSPAN EKLALSPLRL SRELDSTQMG LGLGNVTNEP NQRQANWIPI 480 SWETSMGGPL GEVLHSTSGS IGDCNRSSAL NLMTKGWDKS PRLASSPTGV LQKMTFGSLS 540 NSSAGSSPRA ENLGGLVHI

Sequence ? help Back to Top

Protein Sequence Length: 559 aa Download sequence

MDLGMVGFDG LVGSDSCFGS SLSSDPDSTK QKWYGSGRFL GQERSAPASE DEWRTLKVAK  60
TDDFSASKAI LSQQRGSLLR ANSSSLLSDG QHMLSFSSPN SQSVTLPHYH QSSSSNSRNT  120
GYGSGGGGCL NLASMHGVLM GVRGPFTPSQ WMELEHQALI YKYITANMPI PHNLLIPIRK  180
ALDSAGFSSF TRPSTLGWGA FHLGFSNNTD PEPGRCRRTD GKKWRCSRDA VADQKYCERH  240
MNRGRHRSRK PVEGQSGHSV SGPTTTTTVK LASSTSAALV VPGDGTTNSL GLSHHPQLKN  300
LQPGAPNSCA STPHINSRFF LNNENVGETI QGATDLSMLS PTISLTPNQF SVPKQQNPYE  360
QSSRSEFGSV CSDSLLNPLH KSSTLNNCRN YSSPRNLNDG ESESQHSVHQ FMDDWHKTQL  420
SISIPVDASD FMSSTSSPAN EKLALSPLRL SRELDSTQMG LGLGNVTNEP NQRQANWIPI  480
SWETSMGGPL GEVLHSTSGS IGDCNRSSAL NLMTKGWDKS PRLASSPTGV LQKMTFGSLS  540
NSSAGSSPRA ENLGGLVHI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22840.1	1e-95	GRF family protein