PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028063336.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

CO-like

Protein Properties

Length: 418aa MW: 45645.6 Da PI: 6.5752

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028063336.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	17.9	6.5e-06	12	43	4	35
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHk 35 C+ ++++ + l+C+ ++ lC C ++ H+ XP_028063336.1 12 VPCDYCNDQIAVLYCRADSAKLCLFCDQHVHS 43 57***************************995 PP
2	zf-B_box	23.1	1.5e-07	54	98	3	41
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 ++C+++++++++ C +++ llC+dC H + H++ p XP_028063336.1 54 SQICDNCGSEPVSVRCATDNLLLCHDCDWDAHGScsvsasHDRNP 98 579*************************99994478888887766 PP
3	CCT	64.1	4.2e-22	370	414	1	45
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqae 45 R +a++RYkeK+k+R+++K+irYesRKa+A++R+RvKGrFvk++e XP_028063336.1 370 RGNAMQRYKEKKKNRRYDKHIRYESRKARADTRKRVKGRFVKASE 414 7789**************************************975 PP

Sequence ? help Back to Top
Protein Sequence Length: 418 aa Download sequence
MVSPKSRTGE SVPCDYCNDQ IAVLYCRADS AKLCLFCDQH VHSANALSRK HLRSQICDNC 60 GSEPVSVRCA TDNLLLCHDC DWDAHGSCSV SASHDRNPVE GFSGSPSALE LASALGIDLE 120 DKKPQSQLPS IPNWSFQDSS GVNFDSWMYK SAAGVTLQDL MVPSGNNAMM YSEMGSKRQS 180 PSCGKQNQVL LRQLMELFKT EVVAVDDDNG GSGGGENLVP NQSDWQQANV EGADLGSGGD 240 DEVVDPVNQS LQQQQQQHET PFTSLLMMQT HVDPKSGDQI AQGNVFWDTN HNSQGTQKNA 300 NKPTASHGPA TSESNNLPIG RPSSGLAFIK PKGYSASKDI QFTESSVLLR GETPTAAITK 360 ADMEQLAQNR GNAMQRYKEK KKNRRYDKHI RYESRKARAD TRKRVKGRFV KASEAPDG

Sequence ? help Back to Top

Protein Sequence Length: 418 aa Download sequence

MVSPKSRTGE SVPCDYCNDQ IAVLYCRADS AKLCLFCDQH VHSANALSRK HLRSQICDNC  60
GSEPVSVRCA TDNLLLCHDC DWDAHGSCSV SASHDRNPVE GFSGSPSALE LASALGIDLE  120
DKKPQSQLPS IPNWSFQDSS GVNFDSWMYK SAAGVTLQDL MVPSGNNAMM YSEMGSKRQS  180
PSCGKQNQVL LRQLMELFKT EVVAVDDDNG GSGGGENLVP NQSDWQQANV EGADLGSGGD  240
DEVVDPVNQS LQQQQQQHET PFTSLLMMQT HVDPKSGDQI AQGNVFWDTN HNSQGTQKNA  300
NKPTASHGPA TSESNNLPIG RPSSGLAFIK PKGYSASKDI QFTESSVLLR GETPTAAITK  360
ADMEQLAQNR GNAMQRYKEK KKNRRYDKHI RYESRKARAD TRKRVKGRFV KASEAPDG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33500.2	5e-95	CO-like family protein