PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_028062463.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 419aa MW: 48116.4 Da PI: 7.9561 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 52.3 | 9.4e-17 | 19 | 72 | 1 | 54 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRak 54 r++R ++++++++ Le++Fe++++p++++r +L k++gLt q+k+WFqN+R+ XP_028062463.1 19 RKRRYRHSPYETQMLETFFEQCQHPNERQRCQLGKEVGLTPLQIKFWFQNKRTL 72 899*************************************************85 PP | |||||||
2 | START | 50.6 | 5.5e-17 | 232 | 362 | 20 | 131 |
T-EEEE.......EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGG...CT-TT-SEEEEEEEECTT......EEEEE CS START 20 gWvkss.......esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddke...qWdetlakaetlevissg......galql 93 +W k++ + en+++ ++ + + e +r++++v m+ a+lve lld+++ + + ++ka++l+ + + g lql XP_028062463.1 232 LWIKDPidgrhiiQRENYEKIFSRTS---HlkssrTRFESSREEAIVRMNGAQLVEMLLDSSKrvdLFPTIITKATILQELGNRiprnlsGSLQL 323 78888888884444555555444443...345577899************************99*******************9*********** PP EEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE CS START 94 mvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvd 131 + + lsplv Rdf+f+Ry+ ++g+ w+iv+vS d XP_028062463.1 324 VYEQVHILSPLVGpRDFYFLRYCAEMGKNEWMIVEVSYD 362 ************99***********************87 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 419 aa Download sequence |
MVEFMSSEEF ESSSSSRGRK RRYRHSPYET QMLETFFEQC QHPNERQRCQ LGKEVGLTPL 60 QIKFWFQNKR TLVKTQNEKT EGHALRAENE RLKIENIAAR EMLKDEYCKA CKGISCTKED 120 HLHQLRLENC QLNDKYEYLC DLLATMGISV SKNPSLQRLP SIGSSSDGSE NFLGKRMRGL 180 SLGSSSNGSE NSVDHTLKSQ LKQVQDSDTL RMVQTVSNAI DELTSLFIMD RLWIKDPIDG 240 RHIIQRENYE KIFSRTSHLK SSRTRFESSR EEAIVRMNGA QLVEMLLDSS KRVDLFPTII 300 TKATILQELG NRIPRNLSGS LQLVYEQVHI LSPLVGPRDF YFLRYCAEMG KNEWMIVEVS 360 YDIFDKIESS TQQQDQHHHQ PHSSSASPSA PPPSHSWRLP SGCLIRDLNN GCSRSGHLI |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G73360.1 | 1e-61 | HD-ZIP family protein |