PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028062291.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family MYB
Protein Properties Length: 315aa    MW: 35299 Da    PI: 7.8787
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028062291.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.25.1e-151461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     r  WT+eEd++l+ ++++ G g+W + +++ g+ R++k+c++rw +yl
   XP_028062291.1 14 RRTWTPEEDQKLLAYIEENGHGSWPALPAKAGLQRCGKSCRLRWTNYL 61
                     678*******************************************97 PP
2Myb_DNA-binding51.91.8e-1667112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+++ +E++ +++++++lG++ W++Ia +++ +Rt++++k++w+++l
   XP_028062291.1  67 RGKFSLQEEQSIIQLHALLGNR-WSAIATHLP-KRTDNDIKNYWNSHL 112
                      89********************.*********.************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    
MGRSPCCENV GLKRRTWTPE EDQKLLAYIE ENGHGSWPAL PAKAGLQRCG KSCRLRWTNY  60
LRPDIKRGKF SLQEEQSIIQ LHALLGNRWS AIATHLPKRT DNDIKNYWNS HLKKRLTKMG  120
IDPVTHKPKS DSLNPGQVKV AATLSHIAQW ESTRLEAEAR ESTLLRSFSS SSAQLVLNKA  180
NALPPLQPPP LPLQPLCLDV LTACKGAWLT TLLKENGSTI TGTLEAPTST LNFSDKQLLI  240
RNLGKSNNNN GEVKESMDNT VLVSNFMEGL TDLFIENSHD HLEHDLNDFE ENNNYWNNIL  300
NLVNSTSPSI DSPVF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.21e-94MYB family protein