PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_028061878.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
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Family | AP2 | ||||||||
Protein Properties | Length: 508aa MW: 55576.4 Da PI: 6.4432 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.4 | 6.5e-17 | 166 | 215 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g XP_028061878.1 166 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 215 78*******************......55************************997 PP | |||||||
2 | AP2 | 43 | 1.1e-13 | 258 | 308 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+++ eAa+a+++a+ +++g XP_028061878.1 258 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEIEAARAYDKAAIQYNG 308 89********.7******5553..2.26**********99***********9987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 508 aa Download sequence |
MLDLNLSVVH NENSMAITEK FPDGSGGQMD ESGTSNSSIV NVEVSSNAGD DDDSCSTRVP 60 GRDIFAFNFG IMKLGGECND NTTEEGKEDR MTQSEFVTRQ LFPVSGDPGL TVGQSLAPSP 120 GALLRPNLVD LSFGQASSGG LQEVRVLQPQ QQQVKKSRRG PRSRSSQYRG VTFYRRTGRW 180 ESHIWDCGKQ VYLGGFDTAH AAARAYDRAA IKFRGVDADI NFNLSDYEED LTQTKNLTKE 240 EFVHILRRQS TGFSRGSSKY RGVTLHKCGR WEARMGQFLG KKYIYLGLFD SEIEAARAYD 300 KAAIQYNGRE AVTNFEPSTY DGETISEVNG GGGDHNLDLN LGISTPSSGD GPKDNKNSGH 360 LQFHPYGIQD ARRSNMKNPS TTTIGNPTLE GLAMTSEHCP LWTGGVYPNF FPSYEERATE 420 KRIEVGSSQG PPNWVWQMHG RVTPTQMATF STAASSGFSS VSTTALSASI HPSNPPNPTA 480 LNLCFSSSAT ASGNPQYYYQ MRPLQPPP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28550.3 | 1e-111 | AP2 family protein |