PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028059323.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

MYB

Protein Properties

Length: 326aa MW: 37347.1 Da PI: 6.3941

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028059323.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	60.6	3.3e-19	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +l+++++ +G+g+W+t +++ g+ R++k+c++rw +yl XP_028059323.1 14 KGPWTPEEDHKLIQYIQIHGPGNWRTLPKYAGLQRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	53.1	7.5e-17	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rgr++ eE+e +++++ lG++ W++Ia+ ++ gRt++++k++w+++ XP_028059323.1 67 RGRFSFEEEETIIQLHSVLGNK-WSAIAAQLP-GRTDNEIKNYWNTH 111 89******************.*****.**********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence
MGRSPCCDKN GTKKGPWTPE EDHKLIQYIQ IHGPGNWRTL PKYAGLQRCG KSCRLRWTNY 60 LRPDIRRGRF SFEEEETIIQ LHSVLGNKWS AIAAQLPGRT DNEIKNYWNT HIRKRLLRMG 120 IDPVTHSPCL DLLDMSSILS SAQLNLSNFL PLQTLVNPEL LRLVTTLLAL NPENPELLLQ 180 ELQENQNFNT QLQNQTHLPE PNNLFQTLDQ NQTHVLEPNL FQTPIQNQMQ FMQGMSMGQF 240 SCQNSQENLT SSLNDLSGNS RFQPMKNNQN FTFDSVMSTS MSSPTPLNSS STFINSNTNT 300 EGERESYCSS MLKFEIPESL DFVNFM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28110.1	2e-85	MYB family protein