PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028058990.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

MYB

Protein Properties

Length: 389aa MW: 43495.6 Da PI: 5.085

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028058990.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49.1	1.3e-15	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rgrWT+eEde+l +++ G g+W++ ++ g+ R++k+c++rw +yl XP_028058990.1 14 RGRWTAEEDEILTKYILANGEGSWRSMPKNAGLLRCGKSCRLRWINYL 61 8*****************************99**********97 PP
2	Myb_DNA-binding	51.4	2.5e-16	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ + eE+e++ +++ lG++ W++Ia +++ gRt++++k++w+++l XP_028058990.1 67 RGNISSEEEEIITKLHSTLGNR-WSLIAGHLP-GRTDNEIKNYWNSHL 112 7899****************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 389 aa Download sequence
MGRAPCCEKV GLKRGRWTAE EDEILTKYIL ANGEGSWRSM PKNAGLLRCG KSCRLRWINY 60 LRSDLKRGNI SSEEEEIITK LHSTLGNRWS LIAGHLPGRT DNEIKNYWNS HLSRKIQSFR 120 RPCKNEAPPP MAVDLAKSTV ATKRRGGRTS RSAMKKNKTQ NPTKGPNPKP VKKTEPNASV 180 PMPQTPTLQT ESLSSAISWQ EESVVKINLD LEGNKEGVIV GSPHHDDHAG LALCGGEERK 240 RKSEYNEGLD ESGMLCFDDI MSDELVDPKG VTILGEEREN DTAVFINEER ESDAAAVVIS 300 EERERGGGAM NMSSNGESSS TNSYIDDWDW VWDWDAVVQG NEIWGDEEEN MKFSWLWESD 360 NGKGDSIVNN KLGEINCEKQ EAVVAWLLS

Sequence ? help Back to Top

Protein Sequence Length: 389 aa Download sequence

MGRAPCCEKV GLKRGRWTAE EDEILTKYIL ANGEGSWRSM PKNAGLLRCG KSCRLRWINY  60
LRSDLKRGNI SSEEEEIITK LHSTLGNRWS LIAGHLPGRT DNEIKNYWNS HLSRKIQSFR  120
RPCKNEAPPP MAVDLAKSTV ATKRRGGRTS RSAMKKNKTQ NPTKGPNPKP VKKTEPNASV  180
PMPQTPTLQT ESLSSAISWQ EESVVKINLD LEGNKEGVIV GSPHHDDHAG LALCGGEERK  240
RKSEYNEGLD ESGMLCFDDI MSDELVDPKG VTILGEEREN DTAVFINEER ESDAAAVVIS  300
EERERGGGAM NMSSNGESSS TNSYIDDWDW VWDWDAVVQG NEIWGDEEEN MKFSWLWESD  360
NGKGDSIVNN KLGEINCEKQ EAVVAWLLS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47460.1	2e-79	MYB family protein