PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028058468.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

Trihelix

Protein Properties

Length: 707aa MW: 78691.4 Da PI: 8.7279

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028058468.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	70.7	2.6e-22	613	693	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+ ev++Li++r e+++r++ k++++lWee+s+++ + g++rsp qCk+ w +l ++y++ik ek++ +++pyf++++ XP_028058468.1 613 KWKPGEVMKLINMRGELHSRFQVVKQRMALWEEISANLLADGINRSPGQCKSLWTSLVQKYEEIKGDEKSK-----KNWPYFEDMN 693 7******************************************************************95.....79****97 PP

Sequence ? help Back to Top
Protein Sequence Length: 707 aa Download sequence
MELIKKRLKD FGIFLPSRLK IFKTRRRFSA GPFEIEPIRV THSIPDCCGL VLRCADGTML 60 HTGDWKIDES PLDGKGFDRE ALEELSKEGV TLMMSDSTNI LSPGRTLSET VVADALLRRI 120 SAAKGRVITT QFASNIHRLG SVKAAADLTG RKLVFVGMAL RTYLDAAWKD GKAPIDPSTL 180 VKVEDIDAYA PKDLLIVTTG SQAEPRAALN LASYGSSHSL KLSKEDIILY SAKVIPGNEI 240 RVMKMLNRIS EIGSTIVMGK NEQLHTSGHG YRGELEEVLK IVKPQHFLPI HGELLFLREH 300 ELLGKSTGIR HTTVIKNGEM LGVSHLRNRR VLSNGFISLG KENLQLMYND GDKAFGTSTE 360 LCIDERLRIA SDGIIVVSME ILRPQDADGS VEKTLKGRIR ITTRCLWLDK GKLLDALHKA 420 AHASLSSCPI NCPLAHMERI VSEVLRKMVR KYSSKRPEVI AIAIENPAAV LSDELNARLS 480 GKSHVGFGIS ALRKVVDGHP KKRRTTDIQE EEGKTQQELE GHDIEDDRLL SEEATTSGSE 540 SAEKFSLNSD GSDDFWKSFI ASSPIEQSVK DSNGSVPQEE HREKLKIEET KVDDMVEIPK 600 CQSKSSKPGK RNKWKPGEVM KLINMRGELH SRFQVVKQRM ALWEEISANL LADGINRSPG 660 QCKSLWTSLV QKYEEIKGDE KSKKNWPYFE DMNKILSDLE ATAAATK

Sequence ? help Back to Top

Protein Sequence Length: 707 aa Download sequence

MELIKKRLKD FGIFLPSRLK IFKTRRRFSA GPFEIEPIRV THSIPDCCGL VLRCADGTML  60
HTGDWKIDES PLDGKGFDRE ALEELSKEGV TLMMSDSTNI LSPGRTLSET VVADALLRRI  120
SAAKGRVITT QFASNIHRLG SVKAAADLTG RKLVFVGMAL RTYLDAAWKD GKAPIDPSTL  180
VKVEDIDAYA PKDLLIVTTG SQAEPRAALN LASYGSSHSL KLSKEDIILY SAKVIPGNEI  240
RVMKMLNRIS EIGSTIVMGK NEQLHTSGHG YRGELEEVLK IVKPQHFLPI HGELLFLREH  300
ELLGKSTGIR HTTVIKNGEM LGVSHLRNRR VLSNGFISLG KENLQLMYND GDKAFGTSTE  360
LCIDERLRIA SDGIIVVSME ILRPQDADGS VEKTLKGRIR ITTRCLWLDK GKLLDALHKA  420
AHASLSSCPI NCPLAHMERI VSEVLRKMVR KYSSKRPEVI AIAIENPAAV LSDELNARLS  480
GKSHVGFGIS ALRKVVDGHP KKRRTTDIQE EEGKTQQELE GHDIEDDRLL SEEATTSGSE  540
SAEKFSLNSD GSDDFWKSFI ASSPIEQSVK DSNGSVPQEE HREKLKIEET KVDDMVEIPK  600
CQSKSSKPGK RNKWKPGEVM KLINMRGELH SRFQVVKQRM ALWEEISANL LADGINRSPG  660
QCKSLWTSLV QKYEEIKGDE KSKKNWPYFE DMNKILSDLE ATAAATK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63420.1	0.0	Trihelix family protein