PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028058466.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

Trihelix

Protein Properties

Length: 731aa MW: 81291.5 Da PI: 8.7286

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028058466.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	70.7	2.7e-22	637	717	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+ ev++Li++r e+++r++ k++++lWee+s+++ + g++rsp qCk+ w +l ++y++ik ek++ +++pyf++++ XP_028058466.1 637 KWKPGEVMKLINMRGELHSRFQVVKQRMALWEEISANLLADGINRSPGQCKSLWTSLVQKYEEIKGDEKSK-----KNWPYFEDMN 717 7******************************************************************95.....79****97 PP

Sequence ? help Back to Top
Protein Sequence Length: 731 aa Download sequence
MVTRITLVIP ALDSHTPIFA SSFTMELIKK RLKDFGIFLP SRLKIFKTRR RFSAGPFEIE 60 PIRVTHSIPD CCGLVLRCAD GTMLHTGDWK IDESPLDGKG FDREALEELS KEGVTLMMSD 120 STNILSPGRT LSETVVADAL LRRISAAKGR VITTQFASNI HRLGSVKAAA DLTGRKLVFV 180 GMALRTYLDA AWKDGKAPID PSTLVKVEDI DAYAPKDLLI VTTGSQAEPR AALNLASYGS 240 SHSLKLSKED IILYSAKVIP GNEIRVMKML NRISEIGSTI VMGKNEQLHT SGHGYRGELE 300 EVLKIVKPQH FLPIHGELLF LREHELLGKS TGIRHTTVIK NGEMLGVSHL RNRRVLSNGF 360 ISLGKENLQL MYNDGDKAFG TSTELCIDER LRIASDGIIV VSMEILRPQD ADGSVEKTLK 420 GRIRITTRCL WLDKGKLLDA LHKAAHASLS SCPINCPLAH MERIVSEVLR KMVRKYSSKR 480 PEVIAIAIEN PAAVLSDELN ARLSGKSHVG FGISALRKVV DGHPKKRRTT DIQEEEGKTQ 540 QELEGHDIED DRLLSEEATT SGSESAEKFS LNSDGSDDFW KSFIASSPIE QSVKDSNGSV 600 PQEEHREKLK IEETKVDDMV EIPKCQSKSS KPGKRNKWKP GEVMKLINMR GELHSRFQVV 660 KQRMALWEEI SANLLADGIN RSPGQCKSLW TSLVQKYEEI KGDEKSKKNW PYFEDMNKIL 720 SDLEATAAAT K

Sequence ? help Back to Top

Protein Sequence Length: 731 aa Download sequence

MVTRITLVIP ALDSHTPIFA SSFTMELIKK RLKDFGIFLP SRLKIFKTRR RFSAGPFEIE  60
PIRVTHSIPD CCGLVLRCAD GTMLHTGDWK IDESPLDGKG FDREALEELS KEGVTLMMSD  120
STNILSPGRT LSETVVADAL LRRISAAKGR VITTQFASNI HRLGSVKAAA DLTGRKLVFV  180
GMALRTYLDA AWKDGKAPID PSTLVKVEDI DAYAPKDLLI VTTGSQAEPR AALNLASYGS  240
SHSLKLSKED IILYSAKVIP GNEIRVMKML NRISEIGSTI VMGKNEQLHT SGHGYRGELE  300
EVLKIVKPQH FLPIHGELLF LREHELLGKS TGIRHTTVIK NGEMLGVSHL RNRRVLSNGF  360
ISLGKENLQL MYNDGDKAFG TSTELCIDER LRIASDGIIV VSMEILRPQD ADGSVEKTLK  420
GRIRITTRCL WLDKGKLLDA LHKAAHASLS SCPINCPLAH MERIVSEVLR KMVRKYSSKR  480
PEVIAIAIEN PAAVLSDELN ARLSGKSHVG FGISALRKVV DGHPKKRRTT DIQEEEGKTQ  540
QELEGHDIED DRLLSEEATT SGSESAEKFS LNSDGSDDFW KSFIASSPIE QSVKDSNGSV  600
PQEEHREKLK IEETKVDDMV EIPKCQSKSS KPGKRNKWKP GEVMKLINMR GELHSRFQVV  660
KQRMALWEEI SANLLADGIN RSPGQCKSLW TSLVQKYEEI KGDEKSKKNW PYFEDMNKIL  720
SDLEATAAAT K

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63420.1	0.0	Trihelix family protein